5TRB


Conserved Protein Domain Family
RING-HC_RNF20-like

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cd16704: RING-HC_RNF20-like 
Click on image for an interactive view with Cn3D
RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins
RNF20, also known as BRE1A, and RNF40, also known as BRE1B, are E3 ubiquitin-protein ligases that work together to form a heterodimeric complex that facilitate the K120 monoubiquitination of histone H2B (H2Bub1), a DNA damage-induced histone modification that is crucial for recruitment of the chromatin remodeler SNF2h to DNA double-strand break (DSB) damage sites. RNF20 regulates the cell cycle and differentiation of neural precursor cells (NPCs) and links histone H2B ubiquitylation with inflammation and inflammation-associated cancer. RNF40, also known as 95 kDa retinoblastoma-associated protein (RBP95), was identified as a novel leucine zipper retinoblastoma protein (pRb)-associated protein that may function as a regulation factor in RNA polymerase II-mediated transcription and/or transcriptional processing. All subfamily members contain a C3HC4-type RING-HC finger at its C-terminus.
Statistics
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PSSM-Id: 438364
Aligned: 9 rows
Threshold Bit Score: 105.995
Created: 23-Mar-2015
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:5TRB; Homo sapiens BRE1A binds two Zn2+ ions
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     #  #           # #  #  #           #  #              
5TRB_A         10 MEEIKDYKARLTCPCCNMRkKDAVLTKCFHVFCFECVKTRYDtRQRKCPKCNaaFGANDFHRIYI 74   human
CDQ71072      903 QEEINQYKAKLRCPCCNTRdKETVLTKCFHVFCYECLKTRYDtRQRKCPKCNcaFGANDFHRIYI 967  rainbow trout
O75150        936 QEEIKEYKARLTCPCCNTRkKDAVLTKCFHVFCFECVRGRYEaRQRKCPKCNaaFGAHDFHRIYI 1000 human
XP_002119359  876 MEEIKEYKTKLRCPCCNVNnKDAVLTKCFHVFCIKCIKTRYEtRQRKCPKCNagFGGNDFHRIYI 940  vase tunicate
XP_012554642  810 VEEVKMYKAKLTCPCCNTHgKDAILTKCFHVFCFECLKTRYDtRQRKCPKCNatFGNNDFHKIYM 874  swiftwater hydra
XP_006818089  843 LEENKTYKTQLTCPCCNVKrKDTVLTKCFHLFCSECIKTRYEtRQRKCPECNaaFGANGYHRIYL 907  Saccoglossus kowalevskii
NP_001243104  948 NEEINEYKARLTCPCCNSRvKDAVLTKCFHVFCFECVKTRYDtRQRKCPKCNaaFGANDFHRIYI 1012 zebrafish
XP_003382743  815 LEENRIYRTKLNCPVCASRkKDTVLTKCFHVFCSECIKTRYEtRQRKCPKCNaaFGANDFHKIYI 879  Amphimedon queenslandica
CBY24503       24 NEQIERYQKRLKCPICNIEeKNAILTKCFHVFCYKCLKTRYEtRQRKCPKCNqnFGGNDYHKIYI 88   Oikopleura dioica

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