Conserved Protein Domain Family
RING-CH-C4HC3_NFX1

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cd16696: RING-CH-C4HC3_NFX1 
RING-CH finger, H2 subclass (C4HC3-type), found in transcriptional repressor NF-X1 and similar proteins
NF-X1, also known as nuclear transcription factor, X box-binding protein 1, is a novel cysteine-rich sequence-specific DNA-binding protein that interacts with the conserved X-box motif of the human major histocompatibility complex (MHC) class II genes via a repeated Cys-His domain. It functions as a cytokine-inducible transcriptional repressor that plays an important role in regulating the duration of an inflammatory response by limiting the period in which class II MHC molecules are induced by interferon gamma (IFN- gamma). NFX1 contains an N-terminal PAM2 motif, a C4HC3-type RING-CH finger, a Cys-rich region that harbors several NFX1-type zinc fingers, and a C-terminal R3H domain.
Statistics
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PSSM-Id: 438357
Aligned: 15 rows
Threshold Bit Score: 82.0921
Created: 15-May-2015
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structure of human FANCL with bound Zn2+ ions through its RING-CH finger
  • Comment:RING-CH finger (C4HC3-type)
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.
  • Comment:The RING fingers found in NFX1 and its homologs have an unusual arrangement of zinc-coordinating residues: The conserved helix complete with tryptophan at the C-terminal end is present but the cysteines and histidines are arranged in the sequence as C4HC3-type, rather than the typical C3H2C3-type in RING-H2 finger.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #            #  #    #  #                         #  # 
Q12986        356 YECMVCCElvrvtapVWSCQSCYHVFHLnCIKKWARSPasqad------gqsgWRCPACQ 409  human
ESO86262       10 YECMVCCEnmrpdtaVWNCSSCYHLFHLfCIKKWARSStalv-------egegWRCPACQ 62   owl limpet
XP_006818524  458 YECMVCCDaikcqsaVWSCQGCYTVFHLhCIRKWARSPvarrq-----gnadgWRCPACQ 512  Saccoglossus kowalevskii
NP_001071774  267 YECMVCCDhvrppqaVWSCGTCYNVFHMgCIKKWARSPaari-------eesgWRCPGCQ 319  vase tunicate
KFM56843      572 CECLVCCElirvrdqTWHCLSCYHVFHLrCIRKWAQSStavv-------dggrWRCPACQ 624  Stegodyphus mimosarum
ELT89371      230 YECMVCCEnvwresaIWSCGVCFHVFHLrCIKKWARSAnasdsk---adnsggWRCPSCQ 286  Capitella teleta
XP_004345247  362 YECMVCCDritrkqpVYSCSNCYAVFHIaCLKKWASSAastsssggsnanaagWRCPGCQ 421  Capsaspora owczarzaki ATCC 30864
XP_004935125  368 YECMVCCEvvrivapVWSCQNCYHVFHLnCIKKWARSPasqae-----dsnsgWRCPACQ 422  chicken
XP_013394641  281 YECMVCCSairceaaVWSCSSCFHIFHLyCIKKWARTVhlege-----vaetgWRCPACQ 335  Lingula anatina
XP_014352024  363 YECMVCCEvvrvmapVWSCQSCYHVFHLsCIKKWARSPasqaea----egnggWRCPACQ 418  coelacanth

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