Conserved Protein Domain Family
RING-like_Rtf2

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cd16653: RING-like_Rtf2 
RING-like Rtf2 domain, C2HC2-type, found in the replication termination factor 2 (Rtf2) protein family
The Rtf2 protein family includes a group of conserved proteins found in eukaryotes ranging from fission yeast to humans. The defining member of the family is Schizosaccharomyces pombe Rtf2 (SpRtf2), which is a proliferating cell nuclear antigen-interacting protein that functions as a key requirement for efficient replication termination at the site-specific replication barrier RTS1. It promotes termination at RTS1 by preventing replication restart. SpRtf2 contains a RING-like Rtf2 domain that is characterized by a C2HC2 motif similar to C3HC4 RING-HC finger motif known to bind two Zn2+ ions and mediate protein-protein interactions. The C2HC2 motif lacks three of the seven conserved cysteines of the C3HC4 motif, and forms only one functional Zn2+ ion-binding site. The RING-like Rtf2 domain in fission yeast is required to stabilize a paused DNA replication fork during imprinting at the mating type locus, possibly by facilitating sumoylation of PCNA. The family also includes Arabidopsis RTF2 (AtRTF2), an essential nuclear protein required for both normal embryo development and for proper expression of the GFP reporter gene. It plays a critical role in splicing the GFP pre-mRNA, and may also have a more transient regulatory role during the spliceosome cycle. The biological function of Rtf2 homologs found in eumetazoa remains unclear. They contain a variant C2HC2 motif where the middle conserved histidine has been replaced by cysteine.
Statistics
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PSSM-Id: 438315
Aligned: 62 rows
Threshold Bit Score: 54.9533
Created: 29-Mar-2013
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative Zn
Feature 1: putative Zn binding site [ion binding site], 5 residue positions
Conserved feature residue pattern:C C [HC] C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:RING-like Rtf2 domain (C2HC2-type)
  • Comment:The RING-like Rtf2 domain is characterized by a C2HC2 motif similar to C3HC4 RING-HC finger motif known to bind two Zn2+ ions and mediate protein-protein interactions. The C2HC2 motif lacks three of the seven conserved cysteines of the C3HC4 motif, and forms only one functional Zn2+ ion-binding site.
  • Comment:The RING-like Rtf2 domain found in eumetazoa Rtf2 homologs contains a variant C2HC2 motif where the middle conserved histidine has been replaced by cysteine.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #                  # #                                                        
Q9BY42       119 FICPVVGLEmngrhrFCFLRCCGCVFSERALKEIk--------------------------------------------- 153 human
Q4P3H8       122 FMCPLSSKQmdgqqrFIYIIDCGCVMSATGLRTTvaaakpsq---------------------------------pipnr 168 Ustilago maydis
EPY28917     105 LVCPISGVTfsperdFVGLWPCGHVISENEMKGNye-------------------------------------------- 140 Angomonas deanei
Q6BTA8       128 IQCPITKELnsn-tvYAYLRPCGCIISFKILEGLvkhfgekdn--------------------------------ksdsl 174 Debaryomyces ha...
EFN55769     132 YTCPITSLRcdr-ypFAALRPCGHVLAERALKEAaa-------------------------------------------- 166 Chlorella varia...
XP_013901539 158 YACPITGLPcgr-ytMVALVPCGHIVSQRALDRLgaaglaaastsgaaggsrgasgsgsggsgdvsatrapsaattapta 236 Monoraphidium n...
OSX76701     147 FVCPITQREatgrerWLATVPCGCVVSAAGWDAVraaa-----------------------------------------v 185 laver
PNW70341     173 WLCPVTLVPcer-ypCSALRPCGHVLSDKAIKNLrgpvggsggggggggsgagaggg----grgggaggggaevgggkaa 247
RPD70844     115 FVCPLNLKEmngvqpFVYLQPCGCVFSQAGLKTVagsppskspkadg-----------------------eagsdkgkdv 171 Lentinus tigrin...
XP_003193401 114 FICPLSLREmtgtfpFIALKSCGCVFSDASLRAVvpnltkgagakvipkd-----------------dapeeakplvken 176
Feature 1             #  #    
Q9BY42       154 --aEVCHTCGAAF 164 human
Q4P3H8       169 pehKPCPVCGKAF 181 Ustilago maydis
EPY28917     141 -tkHVCPLCEEEV 152 Angomonas deanei
Q6BTA8       175 qneIDCPNCGEMF 187 Debaryomyces hansenii
EFN55769     167 --dGTCPICGAAF 177 Chlorella variabilis
XP_013901539 237 rapCQCPVCGAPF 249 Monoraphidium neglectum
OSX76701     186 aagGRCPVCESPV 198 laver
PNW70341     248 aadMTCPVCGQVY 260
RPD70844     172 aslDLCPQCGAKY 184 Lentinus tigrinus ALCF2SS1-7
XP_003193401 177 ateVACPNCGKTF 189

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