Conserved Protein Domain Family
mRING-HC-C3HC3D_TRAF4

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cd16641: mRING-HC-C3HC3D_TRAF4 
Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 4 (TRAF4) and similar proteins
TRAF4, also known as cysteine-rich domain associated with RING and Traf domains protein 1, metastatic lymph node gene 62 protein (MLN 62), or RING finger protein 83 (RNF83), is a member of the TRAF protein family, which mainly function in the immune system, where they mediate signaling through tumor necrosis factor receptors (TNFRs) and interleukin-1/Toll-like receptors (IL-1/TLRs). It also plays a critical role in nervous system, as well as in carcinogenesis. TRAF4 promotes the growth and invasion of colon cancer through the Wnt/beta-catenin pathway. It contributes to the TNFalpha-induced activation of the 70 kDa ribosomal protein S6 kinase (p70s6k) signaling pathway, and activation of transforming growth factor beta (TGF-beta)-induced SMAD-dependent signaling and non-SMAD signaling in breast cancer. It also enhances osteosarcoma cell proliferation and invasion by the Akt signaling pathway. Moreover, TRAF4 is a novel phosphoinositide-binding protein modulating tight junctions and favoring cell migration. TRAF4 contains an N-terminal domain with a modified C3HC3D-type RING-HC finger and several zinc fingers, and a C-terminal TRAF domain that comprises a coiled coil domain and a conserved TRAF-C domain.
Statistics
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PSSM-Id: 438303
Aligned: 9 rows
Threshold Bit Score: 82.1136
Created: 3-May-2013
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C DClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other proteins with a C3HC3D-type RING finger with bound Zn2+ ions
  • Comment:modified RING-HC finger (C3HC3D-type)
  • Comment:consensus of the typical C3HC4-type RING-HC finger: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, X is any amino acid and the number of X residues varies in different fingers.
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #            # #  #  #           #  #  
Q9BUZ4        15 RLLCPLCGKPMREPvQVSTCGHRFCDTCLQEFLSEGVFKCPEDQL 59  human
NP_991325     15 RFQCPLCSKAMREPvQVSTCGHRFCDTCLQEFLSEGVFKCPEDQL 59  zebrafish
ACY92671      15 KYVCPLCRLPMRDPvQITTCEHRFCDICLQAYLSEGIFQCPEDKI 59  Saccoglossus kowalevskii
NP_001123338  15 RHQCPLCHFPMRDPvQITACRHRYCDTCLQKFLGEGVFNCPVDHL 59  Ciona intestinalis
XP_006002392  15 RLLCPLCNKAMREPvQVSTCGHRFCDTCLQEFLSEGVFKCPEDQL 59  coelacanth
ALI86640      15 KCICPLCRLPVREAvRVSACGHTFCDVCLQEFLSAGVFKCPEDDK 59  Azumapecten farreri
XP_013379813  15 RLTCPLCSLPMREPvQITVCGHRFCDSCLQEYLREGIFKCPEDEL 59  Lingula anatina
XP_013777955  15 RLSCPLCRLPMKDPiKIITCGHRFCDTCLQEYLSGGVFTCPEDGL 59  Atlantic horseshoe crab
XP_024997853 123 RVLCPLCGKPMREPvRVSTCGHRFCDTCLQEFLSEGVFKCPEDQL 167 chicken

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