Conserved Protein Domain Family
RING-HC_TRIM68_C-IV

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cd16610: RING-HC_TRIM68_C-IV 
RING finger, HC subclass, found in tripartite motif-containing protein 68 (TRIM68) and similar proteins
TRIM68, also known as RING finger protein 137 (RNF137) or SSA protein SS-56 (SS-56), is an E3 ubiquitin-protein ligase that negatively regulates Toll-like receptor (TLR)- and RIG-I-like receptor (RLR)-driven type I interferon production by degrading TRK fused gene (TFG), a novel driver of IFN-beta downstream of anti-viral detection systems. It also functions as a cofactor for androgen receptor-mediated transcription by regulating ligand-dependent transcription of androgen receptor in prostate cancer cells. Moreover, TRIM68 is a cellular target of autoantibody responses in Sjogre's syndrome (SS), as well as systemic lupus erythematosus (SLE). It is also an auto-antigen for T cells in SS and SLE. TRIM68 belongs the C-IV subclass of the TRIM (tripartite motif) family of proteins that are defined by their N-terminal RBCC (RING, Bbox, and coiled coil) domains, including three consecutive zinc-binding domains, a C3HC4-type RING-HC finger, a B-box, and two coiled coil domains, as well as a B30.2/SPRY (SplA and ryanodine receptor) domain positioned C-terminal to the RBCC domain.
Statistics
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PSSM-Id: 438272
Aligned: 6 rows
Threshold Bit Score: 103.053
Created: 20-Apr-2016
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-HC fingers with bound zinc
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #           # #  #  #                 #  # 
Q6AZZ1        13 EVACPICMTFLREPMSIDCGHSFCHSCLSGLWEIPGEsqNWGYTCPLCR 61  human
XP_006762422  13 ELACPICMAYLREPVSIDCGHSFCHSCLAGLWEVPGEsqNWGYTCPLCR 61  Myotis davidii
EGW05567      13 EVNCPICMTFLREPVSISCGHTFCHSCLSGLWKLSGEsqDWGYTCPLCR 61  Chinese hamster
ELK19647      13 EVACPICMTFLREPVSIDCGHSFCQGCISGLWEVPGEfhNWGYTCPLCR 61  black flying fox
XP_004433980  13 EVACPICMTFLREPVSIDCGHSFCHSCLSRLWGVPGEseNCGYTCPLCR 61  southern white rhinoceros
AAL11501      13 EVACPICMTFLREPMSIDCGHSFCHSCLSGLWEIPGEsqNWGYTCPLCR 61  human

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