Conserved Protein Domain Family
RING-HC_TRIM35_C-IV

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cd16599: RING-HC_TRIM35_C-IV 
RING finger, HC subclass, found in tripartite motif-containing protein 35 (TRIM35) and similar proteins
TRIM35, also known as hemopoietic lineage switch protein 5 (HLS5), is a putative hepatocellular carcinoma (HCC) suppressor that inhibits phosphorylation of pyruvate kinase isoform M2 (PKM2), which is involved in aerobic glycolysis of cancer cells and further suppresses the Warburg effect and tumorigenicity in HCC. It also negatively regulates Toll-like receptor 7 (TLR7)- and TLR9-mediated type I interferon production by suppressing the stability of interferon regulatory factor 7 (IRF7). Moreover, TRIM35 regulates erythroid differentiation by modulating globin transcription factor 1 (GATA-1) activity. TRIM35 belongs to the C-IV subclass of the TRIM (tripartite motif) family of proteins that are defined by their N-terminal RBCC (RING, Bbox, and coiled coil) domains, including three consecutive zinc-binding domains, a C3HC4-type RING-HC finger, Bbox1 and Bbox2, and a coiled coil region, as well as a B30.2/SPRY (SplA and ryanodine receptor) domain positioned C-terminal to the RBCC domain.
Statistics
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PSSM-Id: 438261
Aligned: 8 rows
Threshold Bit Score: 106.776
Created: 3-May-2013
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-HC fingers with bound zinc
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #  #           # #  #  #                   #  #                    
Q9UPQ4        15 FKEELLCAVCYDPFRDAVTLRCGHNFCRGCVSRCWEvq-------vsPTCPVCKDRASpADLRTNHTLNNLVE 80  human
XP_001234476  55 FKEELLCPICYEPFREAVTLCCGHNFCKGCISRSWEhr--------qHTCPVCKETSSfDDLRINHTLNNLVE 119 chicken
XP_020633027  16 IREELQCPICYEPFREAVTLRCGHNFCRGCVSHSWHgq-------arPACPVCKAACAvEDLRTNHTLANIVE 81  central bearded dragon
XP_029452064  10 LRQELQCPVCYEPFHDAVTLACGHSFCRQCVKRDRRr---------kAPCPLCRQVVArDELCTNRTLSNLTM 73  two-lined caecilian
XP_006037292  21 FKEELLCPICYDPFREAVTLCCGHNFCKACVSRSWQhq-------hrHPCPVCKELSSpDDLRPNRNLNNIVE 86  Chinese alligator
XP_009570948  31 FKEELLCPICYEPFREAVTLCCGHNFCKGCVSRSWEhr--------hHVCPVCKEASSfDDLRLACFVCQSSK 95  Northern fulmar
GCF63712      20 IKEELLCPICYEPFKDAVTLRCGHNFCKGCVGRSWEnq-------trPVCPVCKARASlEDLRTNHTLANIVE 85  Paroedura picta
XP_001511163  14 VEEDVRCPICYDPLRSPATLPCGHSFCSACLCLYWErcahlglkgpeAPCSLCRWASSsRKLPGPSVILQALV 86  platypus

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