Conserved Protein Domain Family
RING-HC_RAD16-like

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cd16567: RING-HC_RAD16-like 
RING finger, HC subclass, found in Saccharomyces cerevisiae DNA repair protein RAD16, Schizosaccharomyces pombe rhp16, and similar proteins
Budding yeast RAD16, also known as ATP-dependent helicase RAD16, is encoded by a yeast excision repair gene homologous to the recombinational repair gene RAD54 and to the SNF2 gene involved in transcriptional activation. It is a component of the global genome repair (GGR) complex that promotes global genome nucleotide excision repair (GG-NER) by removing DNA damage from non-transcribing DNA. RAD16 is involved in differential repair of DNA after UV damage, and repairs preferentially the MAT-alpha locus compared with the HML-alpha locus. Fission yeast rhp16, also known as ATP-dependent helicase rhp16, is a RAD16 homolog. It is involved in GGR via nucleotide excision repair (NER), in conjunction with rhp7, after UV irradiation. Both RAD16 and rhp16 contain a C3HC4-type RING-HC finger, as well as a DEAD-like helicase domain and a helicase superfamily C-terminal domain.
Statistics
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PSSM-Id: 438229
Aligned: 14 rows
Threshold Bit Score: 83.5443
Created: 31-Jul-2013
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-HC fingers with bound zinc
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #            # #  #  #                #  #    
P31244        535 VICQLCNDEa-EEPIESKCHHKFCRLCIKEYVesfmennnklTCPVCHIGL 584  Saccharomyces cerevisiae S288c
EOR00340      612 HVCRICNDIa-EDAIDARCHHAFCRLCITEYLtgsl--veqpECPSCHVPI 659  Wallemia ichthyophaga EXF-994
P79051        607 IVCKICDEVa-QDAIESRCHHTFCRLCVTEYInaagd-genvNCPSCFIPL 655  Schizosaccharomyces pombe 972h-
EEH20440      747 LVCGICDEPa-EEPIRSRCHHDFCRQCAKDYIrsfde-ggepDCPRCHIPL 795  Paracoccidioides brasiliensis Pb03
XP_005825237  113 EQCGLCKDEa-EDKVVSACKHCFCRSCIEEYVasap--cspvTCPTCEQVL 160  Guillardia theta CCMP2712
ETL84782      454 RSCTICHEYm-EDSVVAKCGHEFCRECVREYIeslpa-ggeaTCPTCSKPL 502  Phytophthora parasitica
XP_014153863  687 DVCGVCQEDa-EDPIRAKCKHVFCREDIKMYLqssid-gqvpQCPVCFVPL 735  Sphaeroforma arctica JP610
PNW76862     1595 PVCGLCHEEp-EDCVVAGCGHPFCRACVMAYVdsav---raaKCPTCNKAL 1641
XP_004349809  599 LVCGICHEEaeDAIVAASCRHVFCREDMHLYLsssg--vdkpQCPVCFRPL 647  Capsaspora owczarzaki ATCC 30864
NP_001323244  620 QECGLCHDPa-EDYVVTSCAHVFCKACLIGFSasl----gkvTCPTCSKLL 665  thale cress

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