4AYC,4ORH,4ORH


Conserved Protein Domain Family
RING-HC_RNF8

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cd16535: RING-HC_RNF8 
Click on image for an interactive view with Cn3D
RING finger, HC subclass, found in RING finger protein 8 (RNF8) and similar proteins
RNF8 is a telomere-associated E3 ubiquitin-protein ligase that plays an important role in DNA double-strand break (DSB) repair via histone ubiquitination. It is localized in the nucleus and interacts with class III E2s (UBE2E2, UbcH6, and UBE2E3), but not with other E2s (UbcH5, UbcH7, UbcH10, hCdc34, and hBendless). It recruits UBC13 for lysine 63-based self polyubiquitylation. Its deficiency causes neuronal pathology and cognitive decline, and its loss results in neuron degeneration. RNF8, together with RNF168, catalyzes a series of ubiquitylation events on substrates such as H2A and H2AX, with the H2AK13/15 ubiquitylation being particularly important for recruitment of repair factors p53-binding protein 1 (53BP1) or the RAP80-BRCA1 complex to sites of DSBs. RNF8 mediates the ubiquitination of gammaH2AX, and recruits 53BP1 and BRCA1 to DNA damage sites which promotes DNA damage response (DDR) and inhibits chromosomal instability. Moreover, RNF8 interacts with retinoid X receptor alpha (RXR alpha) and enhances its transcription-stimulating activity. It also regulates the rate of exit from mitosis and cytokinesis. RNF8 contains an N-terminal forkhead-associated (FHA) domain and a C-terminal C3HC4-type RING-HC finger.
Statistics
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PSSM-Id: 438197
Aligned: 15 rows
Threshold Bit Score: 105.554
Created: 8-Dec-2015
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:4AYC; Homo sapiens RNF8 binds two Zn2+ ions through its RING-HC finger.
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #           # #  #  #            #  #                       
4AYC_B        53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKi--ECPICRkdikSKTYSLVLDNXINKMVNN 116 human
O76064       400 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKi--ECPICRkdikSKTYSLVLDNCINKMVNN 463 human
Q7ZX20       379 ELQCIICSEHFIEAVTLNCAHSFCSYCIKSWKKRKe--ECPICRqeivTETRSLVLDNCIDSMVDK 442 African clawed frog
Q803C1       389 ELQCSICSELFIEAVTLNCAHSFCQHCISEWRNRKd--KCPMCWqnitSQTRSLVLDNCIDRMVEN 452 zebrafish
XP_002741316 407 ELQCSLCYELFVEATTLSCSHSFCNWCITEWLVTKkhcDCPVCRakvtSRNKSIVLDSYIDKMVEN 472 Saccoglossus kowalevskii
EFX72095     455 ELQCGICSELMVFATSLNCMHTFCQHCVREWKKNKv--ECPICRapitTEGRNLLVDNMIDAMVSS 518 common water flea
ELT95456     490 ELQCSICNELLIQATSLNCSHSFCSMCISEWMAVKk--ECPVCRaaitSHLKAIVLDSYIDRMVEH 553 Capitella sp. I Grassle & Gra...
XP_006010749 631 ELQCIICSEHLIEAVTLNCAHSFCCYCIHEWRRRKd--ECPICRqpivSQTRSLVLDNCINRMVEN 694 coelacanth
XP_007890516 438 ELQCIICSEHFIQAVTLNCSHSFCSHCIEEWRKRKq--ECPMCRqpicSQTRSVVLDSCIDRMVET 501 elephant shark
XP_013088424 359 ELQCSICSELFIKATSLNCAHVFCKLCISQWMKVRk--ECPVCRtsitSQVQALALDSYIEKMVEQ 422 Biomphalaria glabrata

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