Conserved Protein Domain Family
RING-HC_malin

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cd16516: RING-HC_malin 
RING finger, HC subclass, found in malin and similar proteins
Malin ("mal" for seizure in French), also known as NHL repeat-containing protein 1 (NHLRC1), or EPM2B, is a nuclear E3 ubiquitin-protein ligase that ubiquitinates and promotes the degradation of laforin (EPM2A encoding protein phosphatase). Malin and laforin operate as a functional complex that play key roles in regulating cellular functions such as glycogen metabolism, unfolded cellular stress response, and proteolytic processes. They act as pro-survival factors that negatively regulate the Hipk2-p53 cell death pathway. They also negatively regulate cellular glucose uptake by preventing plasma membrane targeting of glucose transporters. Moreover, they degrade polyglucosan bodies in concert with glycogen debranching enzyme and brain isoform glycogen phosphorylase. Furthermore, they, together with Hsp70, form a new functional complex that suppress the cellular toxicity of misfolded proteins by promoting their degradation through the ubiquitin-proteasome system. Defects in either malin or laforin may cause Lafora disease (LD), a fatal form of teenage-onset autosomal recessive progressive myoclonus epilepsy. In addition, malin may have function, independent of laforin, in lysosomal biogenesis and/or lysosomal glycogen disposal. Malin contains six NHL-repeat protein-protein interaction domains and a C3HC4-type RING-HC finger.
Statistics
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PSSM-Id: 438179
Aligned: 7 rows
Threshold Bit Score: 71.3853
Created: 7-May-2013
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-HC fingers with bound zinc
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #                 # #  #  #                                         #  #   
Q6VVB1        24 LECKVCFEKFghr-qqRRPRNLSCGHVVCLACVAALahpr----------------------------tlaLECPFCRRA 74  human
NP_001123114   4 PKCKICFDRFsdtdseHIPRNLTCGHALCHKCITAMvnn------------------------------stVECPFCRTV 53  nematode
XP_006011441  23 LECKVCFEKYshq-qqHRPKNLLCGHVMCQDCVSSLarpq----------------------------hfkLECPFCRKF 73  coelacanth
XP_018122635  24 LECKVCFEKYsqq-qkHRPKNLPCGHVICQECVLALcpqg----------------------------ssrLECPFCRKA 74  African clawed ...
XP_007901339  35 LECKVCFESYss---gRRPCSLPCGHAVCRLCLAALstgavklhagssqpditdtasaaaaaddpgasrrlLQCPFCRKT 111 elephant shark
TFK05002      43 LECKVCFEKYsqk-kkHRPRNLPCGHVICLECVFSLahpr----------------------------nfrLECPFCRRA 93  big-headed turtle
KAE8288719   507 LECKVCFEKFstqqreHRPQTLSCGHVLCRECITALshpl----------------------------lrkLECPFCRQL 558 large yellow cr...
Feature 1         
Q6VVB1        75 C 75  human
NP_001123114  54 T 54  nematode
XP_006011441  74 C 74  coelacanth
XP_018122635  75 C 75  African clawed frog
XP_007901339 112 W 112 elephant shark
TFK05002      94 C 94  big-headed turtle
KAE8288719   559 C 559 large yellow croaker

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