Conserved Protein Domain Family
RING-HC_COP1

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cd16504: RING-HC_COP1 
RING finger, HC subclass, found in constitutive photomorphogenesis protein 1 (COP1) and similar proteins
COP1, also known as RING finger and WD repeat domain protein 2 (RFWD2) or RING finger protein 200 (RNF200), is a central regulator of photomorphogenic development in plants, which targets key transcription factors for proteasome-dependent degradation. It is localized predominantly in the nucleus, but may also be present in the cytosol. Mammalian COP1 functions as an E3 ubiquitin-protein ligase that interacts with Jun transcription factors and modulates their transcriptional activity. It also interacts with and negatively regulates the tumor-suppressor protein p53. Moreover, COP1 associates with COP9 signalosome subunit 6 (CSN6), and is involved in 14-3-3sigma ubiquitin-mediated degradation. The CSN6-COP1 link enhances ubiquitin-mediated degradation of p27(Kip1), a critical CDK inhibitor involved in cell cycle regulation, to promote cancer cell growth. Furthermore, COP1 functions as the negative regulator of ETV1 and influences prognosis in triple-negative breast cancer. COP1 contains an N-terminal extension, a C3HC4-type RING-HC finger, a coiled coil domain, and seven WD40 repeats. In human COP1, a classic leucine-rich NES, and a novel bipartite NLS is bridged by the RING-HC finger.
Statistics
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PSSM-Id: 438167
Aligned: 30 rows
Threshold Bit Score: 69.9631
Created: 9-Dec-2015
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-HC fingers with bound zinc
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #  #            # #  #  #                #  #     
Q8NHY2        132 NDFVCPICFDMIe-EAYMTKCGHSFCYKCIHQSLEd------nNRCPKCNYVVD 178  human
EZA52694      121 NDYMCPICFDLId-TAYITRCGHTFCHNCIVKCLEi------kDRCPKCSFTLS 167  Cerapachys biroi
XP_002164501   86 NDITCPVCFEVIk-EPYVTKCGHNFCFNCIKTSLEv------sNRCPQCKFVID 132  Hydra vulgaris
KOF72714       49 NDYICPICFDIId-EAYMTPCGHTFCGECIKNCIEq------nKKCPRCNFVIE 95   Octopus bimaculoides
EDV28057       44 NDYICPICFGVIe-EAYMTKCGHSFCYECIRRSLDe------nSKCPKCNFQIT 90   Trichoplax adhaerens
KFM61590       39 NDFLCPICFEIIs-EAYMTKCGHTFCHKCIVTSLEy------nKRCPKCNFAIE 85   Stegodyphus mimosarum
NP_001071934   34 SDFICPICFNLIe-EAYMTKCGHTFCYNCLKKSLEq------sNKCTKCNSALS 80   Ciona intestinalis
XP_009026337   31 DCYSCPICFNILd-EPYMTKCGHSFCYRCIGHSLEn------dNRCPKCGFIIA 77   Helobdella robusta
EFX68020      115 SDLLCPVCLDMMs-EPYVTTCGHSFCHGCIVRSLEl------aSKCPKCSGPLD 161  common water flea
CEF99945      138 GGVTCPICLDEAptAPQTTTCGHAFCFGCIARHALttresgkpSKCPVCAVEYR 191  Ostreococcus tauri

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