5TRB,4R7E


Conserved Protein Domain Family
RING-HC_Bre1-like

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cd16499: RING-HC_Bre1-like 
Click on image for an interactive view with Cn3D
RING finger, HC subclass, found in yeast Bre1 and its homologs from eukaryotes
Bre1 is an E3 ubiquitin-protein ligase that catalyzes monoubiquitination of histone H2B in concert with the E2 ubiquitin-conjugating enzyme, Rad6. The Rad6-Bre1-mediated histone H2B ubiquitylation modulates the formation of double-strand breaks (DSBs) during meiosis in yeast. it is also required, indirectly, for the methylation of histone 3 on lysine 4 (H3K4) and 79. RNF20, also known as BRE1A and RNF40, also known as BRE1B, are the mammalian homologs of Bre1. They work together to form a heterodimeric Bre1 complex that facilitate the K120 monoubiquitination of histone H2B (H2Bub1), a DNA damage-induced histone modification that is crucial for recruitment of the chromatin remodeler SNF2h to DNA double-strand break (DSB) damage sites. Moreover, the Bre1 complex acts as a tumor suppressor, augmenting expression of select tumor suppressor genes and suppressing select oncogenes. Deficiency in the mammalian histone H2B ubiquitin ligase Bre1 leads to replication stress and chromosomal instability. All subfamily members contain a C3HC4-type RING-HC finger at its C-terminus.
Statistics
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PSSM-Id: 438162
Aligned: 32 rows
Threshold Bit Score: 76.4402
Created: 2-May-2013
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:5TRB; Homo sapiens BRE1A binds two Zn2+ ions
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #  #           # #  #  #            #  #            
5TRB_A     14 KDYKARLTCpCCNMRkKDAVLTKCFHVFCFECVKTRYDt-RQRKCPKCNaaFGANDFHRI 72  human
EER03589  685 RAYRLKVKCsICQQNdKQVALQKCMHCFCRTCVNETMIqaRNRKCPLCGqrFSESDVRTI 744 Perkinsus marinus ATCC 50983
EFJ46479  828 DAMRQLLNCnVCHERqKNRIITKCCHVFCDVCIDRTLTa-RNRKCPGCGivFAKGDIKTF 886 Volvox carteri f. nagariensis
EIE26429  784 EYMRTQLRCnVCHERqKDVIITKCWHIFCSHCIRKNLEs-RNRKCPGCGtpFGQHDVKQF 842 Coccomyxa sp. C-169
EEY66264  769 RDLQKLVNCsVCQDRrKDVLISKCSHMFCKECIENNLKs-RNRKCPTCKkmFGHDDVKSV 827 Phytophthora infestans T30-4
BAM83209  555 EDMRRKLYCtVCKAQeKQVTLLRCFHMFCRDCIQTNIAn-RNRKCPLCGekFGTDDVKPI 613 Cyanidioschyzon merolae strain 10D
ETO09745  315 FLAKQKIYCsVCTQNeKNAILTKCLHIFCRDCLQRTLVa-RNRKCPVCStkFANSEIQSI 373 Reticulomyxa filosa
Q7S304    664 EMLRNLVLCsVCRSNfKNTILKGCGHVFCNECVDNRLAn-RMRKCPSCNkaFDRSDAMPA 722 Neurospora crassa OR74A
PVC52088  647 AVLRRRMTCsVCSENfRDHVITKCGHVFCGVCLNNSIKt-RNRKCPQCKiiFDKNDTQKI 705 Theileria orientalis
Q4WDD7    665 EMLRSLALCtVCRRNfKNTAIKTCGHVFCKECVEERLTs-RSRKCPNCNrsFGNNDHMHI 723 Aspergillus fumigatus Af293

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