1JM7,7JZV


Conserved Protein Domain Family
RING-HC_BARD1

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cd16496: RING-HC_BARD1 
Click on image for an interactive view with Cn3D
RING finger, HC subclass, found in BRCA1-associated RING domain protein 1 (BARD-1) and similar proteins
BARD-1 is a critical factor in BRCA1-mediated tumor suppression and may also serve as a target for tumorigenic lesions in some human cancers. It associates with BRCA1 (breast cancer-1) to form a heterodimeric BRCA1/BARD1 complex that is responsible for maintaining genomic stability through nuclear functions involving DNA damage signaling and repair, transcriptional regulation, and cell cycle control. The BRCA1/BARD1 complex catalyzes autoubiquitination of BRCA1 and trans ubiquitination of other protein substrates. Its E3 ligase activity is dramatically reduced in the presence of UBX domain protein 1 (UBXN1). BARD-1 contains an C3HC4-type RING-HC finger that binds BRCA1 at its N-terminus and three tandem ankyrin repeats and tandem BRCT repeat domains at its C-terminus. The BRCT repeats bind CstF-50 (cleavage stimulation factor) to modulate mRNA processing and RNAP II stability in response to DNA damage.
Statistics
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PSSM-Id: 438159
Aligned: 14 rows
Threshold Bit Score: 130.918
Created: 24-Jul-2013
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteheterodimer
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:1JM7; Homo sapiens BARD1 binds two Zn2+ ions through its RING-HC finger.
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         #  #            # #  #  #        #  #                          
1JM7_B         8 AWAHSRAALDRLEKLLRCSRCTNIlREPVCLGGCEHIFCSNCVSDciGTGCPVCYTPAWiqDLKINRQLDSMIQLCSKLR 87  human
NP_001026417   4 PWAHTRAALERLERALSCSRCAGVlREPVSLGGCEHVFCLSCMGDhvGKGCPVCHVPAWvqDMQINRQLDDMVQLCGKLR 83  chicken
NP_001082131  27 GWERTRDALREMERKLCCSKCMFIlKDPVCLGGCEHVFCWTCVNEnlGNECPLCNTPAWvrDVQVNRQLDNMIQLCAKLR 106 African clawed ...
XP_007888383  17 PWARSGGALVLLERLLQCSACCKLlQEPVCLGGCEHVFCRSCVADsiGNGCPVCHAPAWvqDLQPNRQMNNMIQLCSQLR 96  elephant shark
XP_005997741  65 GWTRTRAALQQLETGLSCSKCAHIlQEPLCLGGCEHIFCRSCVGErlGIRCPVCDIPAWakDVQINRQLNNIIHLFNSLQ 144 coelacanth
XP_013386090   3 DWGKCDTAIGELENLLSCDICHHLvDNPCMLGGCEHCFCRSCISDqlGENCPVCDIPSHarDVQSNRQLANVVLMCKRFK 82  Lingula anatina
7JZV_B         8 AWAHSRAALDRLEKLLRCSRCTNIlREPVCLGGCEHIFCSNCVSDciGTGCPVCYTPAWiqDLKINRQLDSMIQLCSKLR 87 
XP_013084136  26 KFSRTISALDSLRNFIQCCKCAESsTELFSLGQCEHRFCRNCAESngGKPCPVCDMPAYatLAHIDKQLSSISQLCFQMS 105 Biomphalaria gl...
XP_793413      1 MFLATKSALRQLEVSLQCSACHKLlTEPCTLGNCPHLICKACVGKyaGNACPACRAPAWakDLQVKRELGMVVRLCRRLQ 80  purple sea urchin
XP_006824924   7 RWEQTKKALGVLESTLECPLCHSIlKDPSTLGNCDHSFCRSCVGShlGNSCPVCSAPAWvkDLQTNRQLTNVVHLCMKLQ 86  Saccoglossus ko...
Feature 1              
1JM7_B        88 NLLHDN 93  human
NP_001026417  84 HLLDAG 89  chicken
NP_001082131 107 NLLSMG 112 African clawed frog
XP_007888383  97 VLLDNK 102 elephant shark
XP_005997741 145 SLVNTQ 150 coelacanth
XP_013386090  83 RLLAQN 88  Lingula anatina
7JZV_B        88 NLLHDN 93 
XP_013084136 106 NILEGL 111 Biomphalaria glabrata
XP_793413     81 RLINTE 86  purple sea urchin
XP_006824924  87 KIVKGN 92  Saccoglossus kowalevskii

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