5D1K,5D1L,5D1M


Conserved Protein Domain Family
RING-H2_RNF25

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cd16470: RING-H2_RNF25 
Click on image for an interactive view with Cn3D
RING finger, H2 subclass, found in RING finger protein 25 (RNF25) and similar proteins
RNF25, also known as AO7, is a putative E3 ubiquitin-protein ligase that was initially identified as an interacting protein of the E2 ubiquitin-conjugating enzyme, Ubc5B. It is ubiquitously expressed in various tissues and predominantly localized in the nucleus. RNF25 activates the nuclear factor (NF)-kappaB-dependent gene expression upon stimulation with Interleukin-1 beta (IL-1beta), or tumor necrosis factor (TNF), or overexpression of NF-kappaB-inducing kinase. It interacts with the p65 transactivation domain (TAD) and modulates its transcriptional activity. RNF25 contains an N-terminal RWD domain, a C3H2C3-type RING-H2 finger, and a C-terminal Pro-rich region. Both the RING-H2 finger and the C-terminal regions of RNF25 are necessary for transcriptional activation.
Statistics
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PSSM-Id: 438133
Aligned: 18 rows
Threshold Bit Score: 97.8617
Created: 2-May-2013
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteE2 binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H H C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:5D1K; Homo sapiens RNF25 binds two Zn2+ ions through its RING-H2 finger.
  • Comment:C3H2C3-type RING-H2 finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-H-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #  #              # #  #  #                                      #  #    
5D1K_B         6 PHGQCVICLYGFQEkeaFTKTPCYHYFHCHCLARYIQHmeqelkaqgqeqeq--erqhattkqkavgVQCPVCREPL 80  human
NP_957477    120 PHGNCVICLYDFKEgevFTKTSCYHYFHSHCLGRYITHsemelkdrerelee--dktrdrteeeelaVVCPVCRESL 194 zebrafish
NP_001092170 123 PRGHCVICLYDFKEgdsLTKTPCFHHFHSYCLGRYAEHsteqkr------------------seelsILCPVCREDV 181 African clawed frog
ABX00711     118 PSGQCVVCLYGFADgdeFTRTECFHYLHSYCLARHLNAlrrnyqeefdkl-----pawlqktadpfqALCPVCREHI 189 fruit fly
EDV22072     131 PICKCAICLRHFMDasnFIKTDCYHYFHNACIMRYKRHqddn----------------------neeLLCPICREPL 185 Trichoplax adhaerens
EFX81684     128 PTGHCTICLFDFHPddvFTYTPCYHHFHSHCLSRFCESmqtqwkeeddqetannprgsnwkekktkqFTCPVCREVI 204 common water flea
ELT93579      83 PHGQCMVCLAGFEHgqpFTRTPCYHYFHCQCLLRYVTHclaqlkleleeaqr-snvyrhqpkeeqkqVVCPVCRETI 158 Capitella sp. I Gr...
XP_006818762  29 PTCHCAVCLYGFSEgdsFTKTQCFHYFHSYCLAMHLITtekhfieeqekl------ptwqksttgfqASCPVCREPI 99  Saccoglossus kowal...
KFM81313     129 PSGECAICLYGFNEedvFTRTECYHYFHSHCLARYSKNalenndkst------------eagasnfqLLCPMCRVPI 193 Stegodyphus mimosarum
XP_013379626 130 PHGQCVICLECFHEdeeFTRTDCYHYFHCHCLYRHIDHtmklikqeeeeqa---rlgaihlqqpkmeAVCPVCRTPI 203 Lingula anatina

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