6W7Z


Conserved Protein Domain Family
RING-H2_RNF6-like

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cd16467: RING-H2_RNF6-like 
Click on image for an interactive view with Cn3D
RING finger, H2 subclass, found in E3 ubiquitin-protein ligase RNF6, RNF12, and similar proteins
RNF6 is an androgen receptor (AR)-associated protein that induces AR ubiquitination and promotes AR transcriptional activity. RNF6-induced ubiquitination may regulate AR transcriptional activity and specificity by modulating cofactor recruitment. RNF6 is overexpressed in hormone-refractory human prostate cancer tissues and required for prostate cancer cell growth under androgen-depleted conditions. RNF6 also regulates local serine/threonine kinase LIM kinase 1 (LIMK1) levels in axonal growth cones. RNF6-induced LIMK1 polyubiquitination is mediated via K48 of ubiquitin and leads to proteasomal degradation of the kinase. RNF6 binds and upregulates the Inha promoter, and functions as a transcription regulatory protein in the mouse sertoli cell. It acts as a potential tumor suppressor gene involved in the pathogenesis of esophageal squamous cell carcinoma (ESCC). RNF12, also known as LIM domain-interacting RING finger protein, or RING finger LIM domain-binding protein (R-LIM), is an E3 ubiquitin-protein ligase encoded by gene RLIM that is crucial for normal embryonic development in some species and for normal X inactivation in mice. It thus functions as a major sex-specific epigenetic regulator of female mouse nurturing tissues. RNF12 is widely expressed during embryogenesis, and mainly localizes to the cell nucleus, where it regulates the levels of many proteins, including CLIM, LMO, HDAC2, TRF1, SMAD7, and REX1, by proteasomal degradation. Both RNF6 and RNF12 contain a well conserved C3H2C3-type RING-H2 finger.
Statistics
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PSSM-Id: 438130
Aligned: 8 rows
Threshold Bit Score: 70.1748
Created: 2-May-2013
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H H C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:6W7Z; Homo sapiens RLIM binds two Zn2+ ions
  • Comment:C3H2C3-type RING-H2 finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-H-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #               # #  #  #          #  # 
6W7Z_B         44 TCSVCITEYt-eGNKLRKLPCSHEYHVHCIDRWLSENsTCPICR 86   human
Q9Y252        631 ICSVCISDYv-tGNKLRQLPCMHEFHIHCIDRWLSENcTCPICR 673  human
Q9SRM0        106 ECCICLGGFeegEKMKVLPPCSHCYHCECVDRWLKTEsSCPLCR 149  thale cress
XP_002604373  386 SCTICMVEYk-tGNKLRRMPCAHEFHSKCVDRWLKQNgSCPVCR 428  Florida lancelet
KFG45720      854 ECPICRMEYe-dAERLRRLPCLHAFHSECVERWLREHtSCPLCR 896  Toxoplasma gondii FOU
XP_016606820  580 KCTVCLSEYd-aGDSLKGTPCAHWFHDECIDRWLKDHsTCPICR 622  Spizellomyces punctatus DAOM BR117
PIK56429      416 SCTICMGDYe-tNEELRRLPCFHAYHTKCIDKWFEQNsACPICR 458  Japanese sea cucumber
RKP05859      723 ECTICLTAYv-tGERMRTLPCTHGFHVECVDRWLEHNgNCPICR 765  Thamnocephalis sphaerospora

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