3JQO,2BHV,3ZBI


Conserved Protein Domain Family
VirB10

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cd16429: VirB10 
Click on image for an interactive view with Cn3D
VirB10 forms part of core complex in Type IV secretion system (T4SS)
This family contains VirB10, a component of the type IV secretion system (T4SS), including homologs TrbI, TraF, TrwE and TraL. T4S system is employed by pathogenic bacteria to export virulence DNAs and/or proteins directly from the bacterial cytoplasm into the host cell. It forms a large multiprotein complex consisting of 12 proteins termed VirB1-11 and VirD4. VirB10, interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble. The CC is inserted in both, the outer and inner membranes, playing a fundamental role as a scaffold for the rest of the T4SS components and actively participating in T4S substrate transfer through the bacterial envelope via conformational changes regulating channel opening and closing. TrwE in R33 plasmid has been shown to be anchored to the inner membrane and its C-terminal is necessary for conjugation; the transmembrane domains of TrwB and TrwE are involved in TrwB-TrwE interactions. TraF protein of the RP4 plasmid is involved in circularization of pilin subunits of P-type pili. In gonococcal genetic island (GGI) of Neisseria gonorrhoeae, T4SS encodes TrbI and circularization occurs via a covalent intermediate between the C terminus of putative pilin protein TraA and TrbI.
Statistics
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PSSM-Id: 319755
Aligned: 321 rows
Threshold Bit Score: 101.424
Created: 30-Mar-2016
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
oligomer
Conserved site includes 66 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Comment:VirB10, interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble
  • Structure:3JQO: Escherichia coli outer membrane complex of a type IV secretion system VirB10; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          ## ##   ## ####   # ##    ### #           # # # #       #    # # #  # # #  ###
3JQO_A        43 TVPKgKXIPCGTgTELDTTVPGQVSCrVSQDVYSadGLVRLIDkGSWVDGQIt--GGIKdgqARVFVLWeRIRNDqDGTI 120 Escherichia col...
CDX20949     297 VAQG-TMISAVLeTAINTELPGNIRAhVIEPVFSfdGSRILLPaGTRLIGTFgnrDDIEq--ERVLIGWdRALTPdGKSI 373 Mesorhizobium p...
KGJ03288     198 IIQG-TLIEATLeTAISSQLPGNVAAnVSYDVWSmdMSQVLIPrGSKLYGRYn--SQIErgqRRVMIAWdRLVTSdGQSV 274 Paracoccus halo...
WP_039544295 265 VTQG-TIIPANLdTAISSDLPGELKAtISRDVWStdATTVLIPrGSTLIGEYs--SDISlgqRRVLVAWnRVITTdKRTI 341 Ruegeria sp. ANG-R
KJS43069     298 LTQG-SVIQAALqTAINSDLPGSVVAvVSEPVPAfsGDRILIPrGSRLFGQYr--SGIDmhqKRILILWtRVLTPdGTSM 374 Roseovarius sp....
KJZ30786     223 VTQG-TMIQAVLeTAIDSTLQGPIRGlVTTDVVAydGSRILIPrGSRLIGSYs--ADVEtgqNRLLVAWeRIIMPdNQSV 299 Paracoccus sp. ...
WP_051540968 284 IVQG-TIISAVLeTAINTELPGNIRAqVTNPVYSfdGQSILMSaGTRLIGTYn--SKVSiaqKRVLIAWnRAITPeGKSV 360 Ahrensia sp. 13...
WP_052714983 143 VPQG-TIIQASLeTAVDSTLPGPIRGvVSEDVHSmdGSAVLIPgGSKVFGEYs--SGIElgqERILIVWtRILTPsNRSV 219 Paracoccus sp. ...
CUX79974     272 VTQG-SVIQASLeTAIDSSLPGPIRAvVTQDVHSydGMRILIPrGSRLIGRYs--ANIEtgqYRAMVAWeRIILPdNQSV 348 Rhodobacteracea...
KUP91413     309 VLQG-TLIQASLeTAIESTLPGQITAiVNYPVWSfdQSRVLIPeGSRLFGTYn--SNVSlgqARILVGWsRIVTPeGQSV 385 Rhodobacteracea...
Feature 1        ###  #     ###         # #  #  # #  #                                          #
3JQO_A       121 VNIDsAGTNslGSAGIPGQVDAHXwERLRGAIXISLFSdtltalvnqtqs----------------nniqynstensgGQ 184 Escherichia col...
CDX20949     374 ALGS-IGTDllGRAGTEGNVDNHYaKKISAAVLVSTIGalpsiipamtggskssrdggatitveggglgntrrdgqvtSN 452 Mesorhizobium p...
KGJ03288     275 QLEG-YGTDriGRAGMTGKVNNHTlARFGSAAAVSIIGalpdiavasieengg----------settrdtvesigqdaSD 343 Paracoccus halo...
WP_039544295 342 QIGS-RGVGplGRAGLAGNVQHHFaLKFEAAAFISIFTgisnlgsrtvnns---------------ddssfsdgatqfGE 405 Ruegeria sp. ANG-R
KJS43069     375 EIAA-VGGDhlGRSGLTGLVNTRFaERFGGAALISVIGaaptvaaestnne--------------ttsivlgdvgndlQD 439 Roseovarius sp....
KJZ30786     300 QISS-FGGDalGRSGTTGKVNNHFfRRLGAAALISTISaipsalqddsgdggvti-------stggsndpatgvsnavTG 371 Paracoccus sp. ...
WP_051540968 361 KLAA-TGVDrlGRGGQAGNVDSRFgQRFGTALLITSISaipsflanddatgnsa---------tqaatgvaqdssddlKE 430 Ahrensia sp. 13...
WP_052714983 220 NIAS-YGADqlGRSGTGGAVDTRFgKRFGGAAAISIIGagpaiaankledd--------------dvstvvqgvgddfSS 284 Paracoccus sp. ...
CUX79974     349 AIAA-YGGDaiGRAGLSGRVNKRFgERFGAAALISLLSsgpalasrdidne--------------tvrdgatrvssdlRD 413 Rhodobacteracea...
KUP91413     386 QLAA-FGADdqGRSGVTGSVNSRFgLRFGTAALLSIIGagpaiaaseasse--------------tgseiaedvagsfSQ 450 Rhodobacteracea...
Feature 1        #########            # # ### #   #  ##### 
3JQO_A       185 LASEALRSYxs-------ipPTLYDQQGdAVSIFvaRDLDFS 219 Escherichia coli K12
CDX20949     453 VASTVSGQSedilnkylsqpPVLRVAQGeEIRVFvnRDLIIR 494 Mesorhizobium plurifarium
KGJ03288     344 ALDNVLAEYld-------ipATISVDQGaVVMVRvnTDLEMF 378 Paracoccus halophilus
WP_039544295 406 AASDPLTEYls-------ipPTIWIDHGeNINVF--VSRDLY 438 Ruegeria sp. ANG-R
KJS43069     440 AVGSVIADQvs-------iaPTIYVDQGaSVTVLvdRDVVIY 474 Roseovarius sp. BRH_c41
KJZ30786     372 ATESAIGKYvs-------mpPTITVNQGtRITVMvdRDLEIF 406 Paracoccus sp. S4493
WP_051540968 431 TTEDVLEDYlk-------lpPIIRIPQGtQMNVLvnQDLDFT 465 Ahrensia sp. 13_GOM-1096m
WP_052714983 285 ATDTAIGSYin-------lpPTIHVRQGtSVTIIvdRDLEIF 319 Paracoccus sp. S4493
CUX79974     414 ATGNLVSDAls-------lpPVITINQGaRVTVMvdRDLEIF 448 Rhodobacteraceae bacterium HL-91
KUP91413     451 ATNAVIGEYat-------lpPVISVQPGaAISVIvdRDLEFY 485 Rhodobacteraceae bacterium O3.65

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