2YZ3,1KO3,4FR7,4UWS


Conserved Protein Domain Family
VIM_type_MBL-B1

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cd16303: VIM_type_MBL-B1 
Click on image for an interactive view with Cn3D
VIM-type metallo-beta-lactamases, subclass B1; MBL-fold metallo-hydrolase domain
VIM (Verona integron-encoded metallo-beta-lactamase)-type MBLs are integron-associated and are widely distributed acquired MBLs. MBLs (class B of the Ambler beta-lactamase classification) have been divided into three subclasses B1, B2 and B3, based on sequence/structural relationships and substrates, with the B1 and B2 MBLs being most closely related to each other. This subgroup of VIM-type MBLs belongs to the B1 subclass. B1 enzymes are most active with two zinc ions bound in the active site, and have a broad-spectrum substrate profile.
Statistics
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PSSM-Id: 293861
Aligned: 9 rows
Threshold Bit Score: 391.917
Created: 15-May-2015
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:2YZ3: Pseudomonas aeruginosa VIM-2 metallo-beta-lactamase binds (S)-2-(mercaptomethyl)-phenylpentanoic acid (M5P) and two zinc ions

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         #     #                   #                          # # #  
2YZ3_A     42 GEVRLYQIADGVWSHIATQSFd-GAVYPSNGLIVRDgdELLLIDTAWGAKNTAALLAEIEKQigLPVTRAVSTHFHDDRV 120 Pseudomonas putida
1KO3_A     11 GEVRLYQIADGVWSHIATQSFd-GAVYPSNGLIVRDgdELLLIDTAWGAKNTAALLAEIEKQigLPVTRAVSTHFHDDRV 89  Pseudomonas aerugi...
4FR7_A     12 GEVRLYQIADGVWSHIATQSFd-GAVYPSNGLIVRDgdELLLIDTAWGAKNTAALLAEIEKQigLPVTRAVSTHFHDDRV 90  Enterobacter cloacae
4UWS_B     42 GEVRLYQIADGVWSHIATQSFd-GAVYPSNGLIVRDgdELLLIDTAWGAKNTAALLAEIEKQigLPVTRAVSTHFHDDRV 120 Klebsiella pneumoniae
KGM52638   36 ADIEIREVQPGVWVHTSYYTYpgGTRYPTNGLIVREgnGLLLIDTAWGELLTLTLLNQIEAQlkLPVRRAVVSHAHGDRI 115 Lysobacter daejeon...
EWH07001   30 NEVFITKIDEGVWLHTSFYVYpnGTTFPSNGLIVREgqSLTLIDTAWGELQTQQLLSVINTEinLPITRALVTHAHADRA 109 Pseudoalteromonas ...
ACL50513   42 GEVRLYQIADGVWSHIATQSFd-GAVYPSNGLIVRDgdELLLIDTAWGAKNTAALLAEIEKQigLPVTRAVSTHFHDDRV 120 Pseudomonas aerugi...
ACY29468   42 GEVRLYQIADGVWSHIATQSFd-GAVYPSNGLIVRDgdELLLIDTAWGAKNTAALLAEIEKQigLPVTRAVSTHFHDDRV 120 Escherichia coli
AAQ16666   42 GEVRLYQIADGVWSHIATQSFd-GAVYPSNGLIVRDgdELLLIDTAWGAKNTAALLAEIEKQigLPVTRAVSTHFHDDRV 120 Escherichia coli
Feature 1                                                               #                  #  
2YZ3_A    121 GGVDVLRAAGVATYASPSTRRLAEVEgNEIPTHSLEglsssgDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAI 200 Pseudomonas putida
1KO3_A     90 GGVDVLRAAGVATYASPSTRRLAEVEgNEIPTHSLEglsssgDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAI 169 Pseudomonas aerugi...
4FR7_A     91 GGVDVLRAAGVATYASPSTRRLAEVEgNEIPTHSLEglsssgDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGXAI 170 Enterobacter cloacae
4UWS_B    121 GGVDVLRAAGVATYASPSTRRLAEAEgNEIPTHSLEglsssgDAVRFGPVELFYPGAAHSTDNLVVYVPSANVLYGGXAV 200 Klebsiella pneumoniae
KGM52638  116 AGADALEARGIEVYALPLTQQRAVAEgMPVPDHALAgldrpgARVQFGSVELFYPGPGHAPDNLMVWVPSQRVLFGGCAV 195 Lysobacter daejeon...
EWH07001  110 SGVDVLEARGIKVYSHPLTQQLTIEQgTAVPNNVITelatvgAQVKFGSLNVFFPGPGHAMDNIMVWLPDKRILYAGCAV 189 Pseudoalteromonas ...
ACL50513  121 GGVDVLRAAGVATYASPSTRRLAEAEgNEIPTHSLEglsssgDAVRFGPVELFYPGAAHSTDNLVVYVPSANVLYGGCAV 200 Pseudomonas aerugi...
ACY29468  121 GGVDVLRAAGVATYASPSTRRLAEAEgNEIPTHSLEglsssgDAVRFGPVELFYPGAAHSTDNLVVYVPSAKVLYGGCAV 200 Escherichia coli
AAQ16666  121 GGVDVLRAAGVATYASPSTRRLAEAEgNEIPTHSLEglsssgDAVRFGPVELFYPGAAHSTDNLVVYVPSANVLYGGCAV 200 Escherichia coli
Feature 1         #    #                             #                    
2YZ3_A    201 YelsRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHG-LPGGLDLLKHTTNVVKAH 259 Pseudomonas putida
1KO3_A    170 YelsRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHG-LPGGLDLLKHTTNVVKAH 228 Pseudomonas aeruginosa
4FR7_A    171 HelsRTSAGNVADADLAEWPTSIERIQQRYPEAQFVIPGHG-LPGGLDLLKHTTNVVKAH 229 Enterobacter cloacae
4UWS_B    201 LelsSTSAGNVADADLAEWPTSVERIQKHYPEAEVVIPGHG-LPGGLDLLQHTANVVKAH 259 Klebsiella pneumoniae
KGM52638  196 RgaaSDSLGGIADANMTAWPEAIRKARARYAEAKFVVPGHG-EAGGPELLDHTLALLEEL 254 Lysobacter daejeonensis GH1-9
EWH07001  190 RalqSNSVGNMAHGDIHSWLKITQQLKNDYKKLRIVVPGHGeIGGFDLLSHTEKLILNQL 249 Pseudoalteromonas lipolytica SCSIO 04301
ACL50513  201 HelsRTSAGNVADADLAEWPTSVERIQKHYPEAEVVIPGHG-LPGGLDLLQHTANVVKAH 259 Pseudomonas aeruginosa
ACY29468  201 HelsRTSAGNVADADLAEWPTSVERIQKHYPEAEVVIPGHG-LPGGLDLLQHTANVVKAH 259 Escherichia coli
AAQ16666  201 HelsSTSAGNVADADLAEWPTSVERIQKHYPEAEVVIPGHGlPGGLDLLQHTANVVKAHK 260 Escherichia coli

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