3VQZ,4AWY


Conserved Protein Domain Family
AIM-1_SMB-1-like_MBL-B3

?
cd16290: AIM-1_SMB-1-like_MBL-B3 
Click on image for an interactive view with Cn3D
AIM-1, SMB-1, EVM-1, THIN-B and related metallo-beta-lactamases, subclass B3; MBL-fold metallo-hydrolase domain
This subgroup of B3 subclass MBLs includes Pseudomonas Aeruginosa AIM-1, Serratia marcescens SMB-1, Erythrobacter vulgaris EVM-1, and Janthinobacterium lividum THIN-B. MBLs (class B of the Ambler beta-lactamase classification) are a diverse group of metallo-enzymes that are capable of catalyzing the hydrolysis of a wide range of beta-lactam antibiotics. MBLs have been divided into three subclasses B1, B2 and B3, based on sequence/structural relationships and substrates, with the B1 and B2 MBLs being most closely related to each other. This subgroup of AIM-1-,SMB-1-, EVM-1-, THIN-B-like MBLs belongs to the B3 subclass. Subclass B3 enzymes are most active with two zinc ions bound in the active site, and have a broad-spectrum substrate profile. These B3 enzymes have a modified Zn2/DCH site (Asp-His-His).
Statistics
?
PSSM-Id: 293848
Aligned: 15 rows
Threshold Bit Score: 381.311
Created: 20-Aug-2015
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:3VQZ: Serratia marcescens SMB-1 metallo-beta-lactamase binds the inhibitor mercaptoacetate and two zinc ions

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                        # # ##       
3VQZ_A      5 WSSPQQPFTIYGNTHYVGTGGISAVLLSSPQGHILVDGTTeKGAQVVAANIRAMGFKLSDVKYILSTHSHEDHAGGISAM 84  Serratia marcescens
EZP83821   68 WADPAPPARIFANTWYVGTCGISAILVTGDKGHVLVDAGVtKAAPLVLANIRRAGFNPRDVRWIVASHEHFDHVGALAAL 147 Novosphingobium re...
4AWY_B     37 WNDPAMPLKVYGNTWYVGTCGISALLVTSDAGHILVDAATpQAGPQILANIRALGFRPEDVRAIVFSHEHFDHAGSLAEL 116 Pseudomonas aerugi...
KKO65591   46 WNRPQQPARIHGDTYYVGVGGLSVVLIHTREGLILIDGALpQSVAAIKEHILELGFRLEDIKFILNTEAHFDHSGGIAAL 125 Janthinobacterium ...
KFN42531   30 WNQPHAPFRLIGNSYYVGVDGLSSVLIVGKQGHVLIDGALpQSAERIAANIRTLGFRVEDVKWIVNSHAHYDHAGGIAAL 109 Arenimonas oryzite...
AGH50643   38 WLRPQAPARIFGDTYLVGFAGMTVALIRTEAGLILIDGALpQGVPAIEENIRRLGFDVKDVRLILSTEPHYDHAGGLAAL 117 Sphingomonas sp. MM-1
AKJ06219   33 WNRPQAPFRVYGNTYYVGVAGLSSVLIDSGKGLILVDGALpQSAERIAEGVRALGFDLRDVKWILNSHAHSDHAGGIAAL 112 Archangium gephyra
AKC41000   45 WTQPRAPIRVHGDTYYVGTEGISSVLIRTDEGLILLDVGMpQSAPQVEDNIRTLGFAVEDLKYVLSSHTHVDHAGGIAAV 124 Mycobacterium chel...
CDG83473   36 WLKPQRPLRIHGDTYYVGFGGLSLVLIDSKAGLILIDGALpQAVPAIAANIQQLGFNIEDVKYILNTEAHFDHAGGIAAL 115 Janthinobacterium ...
ETI64793   25 WLAPQSPARLHGSTYLVGFGGLNVALIRTSAGLILIDGAVpQAVPDIEANIRQLGFSIRDVKLILSTEPHYDHAGGLAAL 104 Sphingobium sp. C100
Feature 1                                 #                                      #            
3VQZ_A     85 QKlTGATVLAGAANVDTLRTGVspkSDPQFGs--lSNFPGSAKVRAVADGELVKLGPLAVKAHATPGHTEGGITWTWQSC 162 Serratia marcescens
EZP83821  148 QQaTGAKVAALPAQKAALASGKpsaDDPQFAg--lDPIAPVRVDRVLKDGDTVTVGNLVLTAHATPVHAPGSTSWTWTSC 225 Novosphingobium re...
4AWY_B    117 QKaTGAPVYARAPAIDTLKRGLpdrTDPQFEv--aEPVAPVANIVTLADDGVVSVGPLALTAVASPGHTPGGTSWTWRSC 194 Pseudomonas aerugi...
KKO65591  126 ARdSGAQVVASPLGAQALRAGRvldTDPQAGa--iDPMPAVQDVREIADGETLELGGVTVTARYTPGHTPGSTSWTWVSC 203 Janthinobacterium ...
KFN42531  110 QRlSGAQVAASVLGAATLRAGTaddADPQHGygdaMRFPPVAKVRELRDGEVLALGELRITAHYTPGHTSGGDTWTWRSC 189 Arenimonas oryzite...
AGH50643  118 ARdSGATVIASVPAAALLRRGEsgpDDPQAGt--lAAFPPVAKLRAVRDGERIRLGGTTITARATPGHTTGSMSWAWRSC 195 Sphingomonas sp. MM-1
AKJ06219  113 RRmSGAQVAASPAGAKALRLGSttpDDPQAGfgaaMRYPAVRDVVTVADGGTVALGELVVTAHHTPGHTPGATTWTWRSC 192 Archangium gephyra
AKC41000  125 VHdSGATAVSSPIGAQSLRAGHvsaDDPQASdtanAAFPAVERVREVADGEVLKLGNVALTAHFTPGHTPGGVSWTWKSC 204 Mycobacterium chel...
CDG83473  116 ARdSGAITVSSPAGIAALAGGHvlaNDPQAGq--iDAFAPVSKLQAIGDGETLHLGNTAISAHFTPGHTPGSTSWSWRSC 193 Janthinobacterium ...
ETI64793  105 ARdSGATVIASMPAAAVLRQGGgdrDDPQAAw--lERFPGVAKLRTVRNGEVIRLGDVAVTAHATPGHTLGSMSWSWKSC 182 Sphingobium sp. C100
Feature 1                    # #                                        #                     
3VQZ_A    163 EQ---GKCKDVVFADSLTAVsadSYRFSDh---pEVVASLRGSFEAVEKLSCDIAIAAH--PEVNDMWTRQQRaake-gn 233 Serratia marcescens
EZP83821  226 APk--AGCRKIAYADSSSTIssdGYRFTDh---pARVAAIRKGLPVMAALPCDVLLTPH--PGQSDMMERFAGtk----- 293 Novosphingobium re...
4AWY_B    195 EG---DDCRQMVYADSLTAIsddVFRYSDdaahpGYLAAFRNTLARVAALDCDILVTPH--PSASGLWNRIGPraa---- 265 Pseudomonas aerugi...
KKO65591  204 EDaagQECLNVVFGASLTPVgagHFHFSGdaahgDMTPAFRRTMQDFARLPCDILISAH--PDHSGADEKLRRllegvtp 281 Janthinobacterium ...
KFN42531  190 EG---KVCRNLVYADSLTPVsapGFRYTAdg--gARIAQFRRSIATVRALPCDVLISAH--PGLSNLFDKQQArdrrgkk 262 Arenimonas oryzite...
AGH50643  196 EG---ARCADILFGSSLNPVsadGYRFSDpa-hrATVAAFRRSFATVRAMKCDILLTAH--PDHSGGDGKIARlaqgaep 269 Sphingomonas sp. MM-1
AKJ06219  193 EG---ERCVDVVYAESLTAVsapRFRYGAd---aARVQRFRGSIQKVRTLPCDVMIPTH--PEAGRVFELRARsere-gr 263 Archangium gephyra
AKC41000  205 EG---GRCLDMVYADSLNAVatgNYRFTP-----GHVSRFRQSIQTVRALPCDILFSVH--PEQADDITKLNRlavqrdp 274 Mycobacterium chel...
CDG83473  194 QN---GQCVDIVFGASLNAVsadRFHFSAaa-nqSSTAVFRSGIRNFAQLPCDILISAH--PDHSGFDQKLQQaarqpas 267 Janthinobacterium ...
ETI64793  183 EG---KACKTIVFASSLNPLaadGWRFADpa-hrGFVEAFRGTFARVKAMRCDLLIASHplDGDADRLAKLAKars---p 255 Sphingobium sp. C100
Feature 1                             
3VQZ_A    234 saYVDNGACRAIAAAGRKRLETRL 257 Serratia marcescens
EZP83821  294 -pLADKNACPAYAKFAEGRLAQRL 316 Novosphingobium resinovorum
4AWY_B    266 apLMDTTACRRYAQGARQRLEKRL 289 Pseudomonas aeruginosa
KKO65591  282 npFIDAQACSQYAVKNEAKLDARI 305 Janthinobacterium sp. KBS0711
KFN42531  263 naLIDPNACRAYADDAEARLGKRI 286 Arenimonas oryziterrae DSM 21050 = YC6267
AGH50643  270 npFIDPAACRAYADKYEAVLDARL 293 Sphingomonas sp. MM-1
AKJ06219  264 qaFIEPGACRAYADRADRGLTARL 287 Archangium gephyra
AKC41000  275 npMIDPTACTALADTFDAKLDKRI 298 Mycobacterium chelonae
CDG83473  268 npFIDPQACRNYAAKYEQKLDARL 291 Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628
ETI64793  256 hpFVDPAACRRYAMRAEAVLEKKL 279 Sphingobium sp. C100

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap