4UI9,5BPZ


Conserved Protein Domain Family
Apc5_N

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cd16270: Apc5_N 
Click on image for an interactive view with Cn3D
N-terminal domain of the anaphase-promoting complex subunit Apc5 (or Anapc5)
The N-terminal domain of Apc5 interacts with subunits Apc4, Apc15, and CDC23. Apc5 is a subunit of the eukaryotic anaphase-promoting complex/cyclosome (APC/C) which is a multi-subunit ubiquitin ligase that mediates the proteolysis of cell cycle proteins in mitosis and G1. Although Apc5 does not contain a classical RNA binding domain, it binds the poly(A) binding protein (PABP), which directly binds the internal ribosome entry site (IRES) of growth factor 2 mRNA. PABP was found to enhance IRES-mediated translation, whereas Apc5 over-expression counteracted this effect. In addition to its association with the APC/C complex, Apc5 binds much heavier complexes and co-sediments with the ribosomal fraction. The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC.
Links
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Statistics
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PSSM-Id: 293878
Aligned: 49 rows
Threshold Bit Score: 70.7345
Created: 6-Nov-2015
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:Apc4 interaction interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    ##                #  ##  ## ##   #                                  
4UI9_O        32 PYKIAVLVLLSEMSRTgeg--------avsLVERRRLNQQLLPLLQGPD----ITVSKLLKLIEesc------pqlANSV 93  human
EFA81465      16 PHKICLCALIDHYLNAql-----------hPFQKKSLSILLLKYIKNPDs---YNEPTLYDIILelkki---risnVFLT 78  Polysphondylium...
XP_013759824  10 PHKVALLGLVQYYVENt------------gSSDLALFLVRELESDEVNEd---HGLAYLYRRIQvvnr----gsmlCDRL 70  Thecamonas trah...
KIK70807      12 PHHISLLAILYLIFKDirsk-------tfpPDFLLHIQRTLLDEISEVAl--pKSALELQSKLEaaphgdsmeaktLILV 82  Gymnopus luxuri...
XP_005834642  11 PHKVALSVLIQDLCTPen----------ipPNARPVLSLFLLEHVRPVDdfreMTLSQLCSALSqlhpp--lghalAHQL 78  Guillardia thet...
BAD44129      15 PHKISVCILLQIYAPSaqmslp---fpfssVAQHNRLGLYLLSLTKSCDdifePKLEKLINQLRevgee--mdawlTDHL 89  thale cress
KNZ74239      14 PHHVDLLIILVFAFKEpdck-------dipPAFLLHLYRTLLNEISEVSr--pQSHNDLMKTVCsgpga---dsekSQRV 81  Termitomyces sp...
EPS62003      14 PHKLSFCILVQVYAPPsqisip---fpfssVSQHNRFGILLLSLTKECDailePSLDELIAKLSevsge--lnewfSDHL 88  Genlisea aurea
XP_012749846   9 PHKITLCSVIDHYVNGqlnpiqkkslslllVKHIKNPSNFKEPLLGTFId---TELRQVAKLSKs----------yLDDD 75  Acytostelium su...
CEO99912      15 TFDRRVSPLNVCLCTLvmh---------yaEVAGSSLARALLDLTQRSAgpyeMSLGELRQCLVrr---------gLSDA 76  Plasmodiophora ...
Feature 1                                        #                        ####                   
4UI9_O        94 QIRIKLma--egELKDMEQFFDDLSDSFSGTEPev--------------------hKTSVVGLFLRHMILAYSKLSFSQV 151 human
EFA81465      79 QELIEYit--feTIDDLQQFFSSIKIFFEKERQvdendededdeeeqqqqqkeyldGKSVLGLFVKKVLLIFNQSLFDGL 156 Polysphondylium...
XP_013759824  71 LTLLMTls---eSPDALLDTFAALGEMLKADGHysvad--------------grlkLDSVMGLFVRRQLLTFNKLSFDGM 133 Thecamonas trah...
KIK70807      83 YKAFRLe-----TIDHLINFFSGLPVLYQDKDEgpep----------------ilaRRSIFGFYVRRCVIAFGKLSFSGV 141 Gymnopus luxuri...
XP_005834642  79 VRSMRKv----dSPDALFDTLQSLELVLQLNVTcedsa--------------pnlnSSSALGIFVRKVLLTFHTTMFDGL 140 Guillardia thet...
BAD44129      90 TNRFSSl----aSPDDLLNFFNDMRGILGSLDSgvvqdd------------qiildPNSNLGMFVRRCILAFNLLSFEGV 153 thale cress
KNZ74239      82 ITAIQAahsdltSADQITNFFGNLPSLFVEKTEdepp----------------vlmRRSIFGYFSRRCFVSFLKLSFSGV 145 Termitomyces sp...
EPS62003      89 TQRLTSf----sSPDDLFNFFADLRVILGGSEStvmddd------------qilldPSSTIGLYVRRCLLAFNQMSFEAI 152 Genlisea aurea
XP_012749846  76 LIQCITf----eTIDDLNEFFSSLALLFEESRQdeededdsm------qtggahinVKSILGIYVKKVLMVFNNLMFDGL 145 Acytostelium su...
CEO99912      77 EEYLSDivggvqYPDDIVDLFADFDRTINISTSeneys--------------spihRASPFGVFLREIVLAFNLLPFSGV 142 Plasmodiophora ...
Feature 1                      
4UI9_O       152 FKLYTALQQYFQSD 165 human
EFA81465     157 ISLYNQMRDYINQY 170 Polysphondylium pallidum PN500
XP_013759824 134 TRLWRAIVAYKDSH 147 Thecamonas trahens ATCC 50062
KIK70807     142 IHLHENFQLWLAGK 155 Gymnopus luxurians FD-317 M1
XP_005834642 141 SDLYSKMQRYLEDF 154 Guillardia theta CCMP2712
BAD44129     154 CHLFSSIEDYCKEA 167 thale cress
KNZ74239     146 VKLQKDYQSWCHDD 159 Termitomyces sp. J132
EPS62003     153 SHLLTNIGMYCKVA 166 Genlisea aurea
XP_012749846 146 IHLYEQINEYMKQY 159 Acytostelium subglobosum LB1
CEO99912     143 ARLFDEFVAFCAQD 156 Plasmodiophora brassicae

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