Conserved Protein Domain Family
OCRE_SUA_like
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cd16166: OCRE_SUA_like 
OCRE domain found in Suppressor of ABI3-5 (SUA) and similar proteins
SUA is an RNA-binding protein located in the nucleus and expressed in all plant tissues. It functions as a splicing factor that influences seed maturation by controlling alternative splicing of ABI3. The suppression of the cryptic ABI3 intron indicates a role of SUA in mRNA processing. SUA also interacts with the prespliceosomal component U2AF65, the larger subunit of the conserved pre-mRNA splicing factor U2AF. SUA contains two RNA recognition motifs surrounding a zinc finger domain, an OCtamer REpeat (OCRE) domain, and a Gly-rich domain close to the C-terminus.
Links
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Statistics
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PSSM-Id: 293885
Aligned: 16 rows
Threshold Bit Score: 72.7145
Created: 19-Jun-2015
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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Feature 1:OCRE repeat 1 [structural motif]
Evidence:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1              ########                                               
NP_190991     577 TSAPQSGYVWDEASGYYYDAA----SGYYYDGNSGLYYDSN--SGLWYSYDQqtQQYVPC 630  thale cress
XP_011628094  367 NGSPVSEVGEGPETDYVYDESsgssLGYYYDPVSQLFCSAA--TGRWYSYNGqsGAYDEI 424  Amborella trichopoda
XP_002674316  372 KALAESGFIFDSDSGYYYNSE----LNYYYDINTGYYYDCA--GGFWMYYNEedKTYVAF 425  Naegleria gruberi strain NEG-M
XP_002951145  514 EFVAPPGYVFDPSSGYFYSED----SGMYYDTSSGGYCQAV--TGRWFYLDKssGTFVDW 567  Volvox carteri f. nagariensis
CEF97393      170 SSACESDYVFDKATGYYRHRT----TGALYDAVTGLFYDAA--TNVWYSWNEktQEHIVV 223  Ostreococcus tauri
XP_005849831  381 PGDELDGFVLDSATGLLYNSS----LGCYYDSSRSLFGDAS--SGLWYRLDGgtGEYQLA 434  Chlorella variabilis
ABR17802      369 GGETDSDYVYDESSGYYYSNK----LGYYYDTTTGLFCNAV--SGRWYRFNEqsNTYEEI 422  Sitka spruce
XP_002504758  422 AALEQSGYVYDPDTGYYKDEA----SGMWYDANSGLSYHAE--SAAWYKWNAetNAYEPA 475  Micromonas sp. RCC299
XP_011397895  352 VPTPPQGYVYDPASKFWYSAA----SGMHWDAKSGGFYSGE--SGKWYVWDAssQQFVEW 405  Auxenochlorella protothecoides
KDD71524      130 KEAPAEGFVLDPQSGYYWDAG----SGYYYDPASGLYCHPEcnAGSWGSFDAa-GAFVEH 184  Helicosporidium sp. ATCC 50920

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