2JJS,4KJY


Conserved Protein Domain Family
IgV_CD47

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cd16090: IgV_CD47 
Immunoglobulin variable region (IgV) in Cluster of Differentiation (CD) 47
The members here are composed of immunoglobulin variable (IgV) region in the Cluster of Differentiation (CD) 47 (also known as integrin associated protein/IAP). CD47 partners with membrane integrins and binds thrombospondin-1 (TSP-1) and signal-regulatory protein alpha (SIRP alpha). It is involved in apoptosis, proliferation, adhesion, migration, and immune and angiogenic responses. Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Statistics
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PSSM-Id: 409511
Aligned: 25 rows
Threshold Bit Score: 175.896
Created: 22-Apr-2015
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:SIRP-CD47 complex [polypeptide binding site]
Evidence:
  • Structure:4KJY: human CD47 binds SIRP alpha, contacts at 4A
  • Structure:2JJS: human CD47 binds SIRP alpha, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                            # # #                                       
2JJS_C         2 LLFNKTKSVEFTFGND-TVVIPCFVTNMEAQNTTEVYVKWKFKGRDIYTFDGALNKSTVpTDFSSAKIEv-SQLLKGDAS 79  human
4KJY_A         2 LLFNKTKSVEFTFGND-TVVIPCFVTNMEAQNTTEVYVKWKFKGRDIYTFDGALNKSTVpTDFSSAKIEv-SQLLKGDAS 79  human
AAP70029      20 LVFNAVDFVEKYACND-TVVLPCIVTNLKENNDSSMHVSWKRQGQVIFSFNGPEQRIYRhESVPSANFLskADLFKGIAS 98  chicken
XP_007057625  30 LQFNAIKSVEQTICNE-TVILPCIVTNLAQKNIKVMFVKWKLEKNEFFSFDGSTGKTDRnKNFSSAVLEsvQNLSLGSAS 108 green sea turtle
XP_007433525  21 LFFKSVPFVEIDSCNGaVVILPCVVTNLKYNQSSSMFVTWLFQGKRFFIFDGVTDNITRnSSFQTATFQnrSMLPFGIAS 100 Burmese python
XP_008105997  21 LYFEKVRSVTLDICNT-SAIIPCRVTNLILHRTNAIFVKWKLQGSEFFSYDGVENKVTRnSTFQSANLLdlSLLPNGTAS 99  green anole
KFO57637       5 LSLVGTGVIEKNDCNE-TVVLPCYVTNLKENNENLMLVTWKKQGDIIFSYHGGKKEFNInPSFSSARLLsqPDLIKGVAS 83  American crow
KFO73405       5 LELTTRSPVESTSCNR-TVTLPCYVVDLKLTSAKGMFVTWQKHDKLIFSYDGATQEFFRdPVVPSANLAslVDLPKGVAS 83  common cuckoo
KFP41599       5 LTFNVTDPVEINNCNK-TVLLPCYVNNLRENNVHVMFIRWRKGREKVLSFDGENEKTVV-KVPSARLPPv-ADILKGNAS 81  Chlamydotis und...
KFP70141       4 QLTLIGSDVEVTECNS-TVILPCSVTNLMENNEDVMFVIWKKHRKRIFSFDGVIKDVYRdAAFSSANLLsqADLAKGTAS 82  rifleman
Feature 1                         #        #         
2JJS_C        80 LKMDKSDAVshtGNYTCEVTELTREGETIIELKYRV 115 human
4KJY_A        80 LKMDKSDAVshtGNYTCEVTELTREGETIIELKYRV 115 human
AAP70029      99 LRLKNAEAPd--GNYSCEVTELNREGETKMKLRTHM 132 chicken
XP_007057625 109 LSISKTQAVp--GNYSCEVTESNREGETVIELIYHR 142 green sea turtle
XP_007433525 101 LVVSTKEALl--GNYTCEVTESNREGETRFELRNSS 134 Burmese python
XP_008105997 100 LILSREEAPp--GNYTCDVAESSREGDTIVELIHIS 133 green anole
KFO57637      84 LVLSSAQATv--GNYSCEVIESNSVGEIKMELRNSS 117 American crow
KFO73405      84 LTFKNGEGVd--GNYSCKVTVSNSEGKITVELRSIT 117 common cuckoo
KFP41599      82 LTLNSAEADi--ANYSCEVTESNREGAVTVEIRNRS 115 Chlamydotis undulata macqueenii
KFP70141      83 LVLSGAQATt--GNYTCQVTESNREGGVSIEVINKT 116 rifleman

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