1VDF,3V2N,1MZ9


Conserved Protein Domain Family
TSPcc

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cd16076: TSPcc 
Click on image for an interactive view with Cn3D
Coiled coil region of thrombospondin
This domain family contains coiled coil region of subgroup B of thrombospondins, comprising TSP-3, TSP-4, and TSP-5, that assemble as pentamers. This region is located adjacent to the N-terminal domain (NTD) of thrombospondin (TSP), that mediates co-translational oligomerization via formation of a left-handed super-helix which binds hydrophilic signaling molecules such as vitamin D3 and vitamin A. Pentameric TSPs are stabilized by inter-subunit disulfide bonds formed between cysteine residues adjacent to the C-terminal end. TSP-5 is also known as cartilage oligomeric matrix protein (COMP). TSPs comprise a conserved family of extracellular, oligomeric, multidomain, calcium-binding glycoproteins. In mammals, they have several complex tissue-specific roles, including activities in wound healing and angiogenesis, connective tissue organization, vessel wall biology, and synaptogenesis, all mechanistically derived from interactions with cell surfaces, cytokines, growth factors, or components of the extracellular matrix (ECM) that together regulate many aspects of cell phenotype. In invertebrates, TSPs may have ancient functions such as bridging activities in cell-cell and cell-ECM interactions. Most protostomes and inferred basal metazoa encode a single TSP with the general domain organization of subgroup B TSPs and with a pentamerizing coiled coil.
Statistics
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PSSM-Id: 293923
Aligned: 9 rows
Threshold Bit Score: 37.4174
Created: 29-Mar-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:3V2N: Mus musculus COMP coiled coil region binds myristic acid; contacts at 4.0A
  • Structure:1MZ9: Mus musculus COMP coiled coil region binds Vitamin D3; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 #          #  #                 
1VDF_A          6 QMLRELQETNAALQDVRELLRQQVKEITFLKNTVMECDAC 45   Norway rat
3V2N_A          6 QMLRELQETNAALQDVRELLRQQVKEITFLKNTVMECDAC 45   house mouse
1MZ9_A          6 QMLRELQETNAALQDVRELLRQQVKEITFLKNTVMECDAC 45   house mouse
P49746        230 ALVTQLTLFNQILVELRDDIRDQVKEMSLIRNTIMECQVC 269  human
Q16ZU9        253 NLARSLNELIQMVRELREEVRRQREEIQQLRSLIENCAGC 292  yellow fever mosquito
P35443        222 QFLGQMTQLNQLLGEVKDLLRQQVKETSFLRNTIAECQAC 261  human
NP_001121588  238 VLAAQLLQFTRMMTSLKTDMRHMAHETALLRQTIIRCHAC 277  Ciona intestinalis
NP_001121589  235 ELIVQLSDLTSVLQDIHHEMKEQILEARALRTTIQQCTLC 274  Ciona intestinalis
NP_001107896  214 VEAGPMFELMRMIQELKQKVDQQTKETADLKKTILECVPC 253  zebrafish

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