1URQ


Conserved Protein Domain Family
R-SNARE_STXBP5

?
cd15893: R-SNARE_STXBP5 
Click on image for an interactive view with Cn3D
SNARE domain of STXBP5
Syntaxin binding protein 5 (STXBP5, also called Tomosyn), as well as its relative Syntaxin binding protein 6 (STXBP6, also called Amisyn) contains a C-terminal R-SNARE-like domain, which allows it to assemble into SNARE complexes, which in turn makes the complexes inactive and inhibits exocytosis. Tomosyn contains an N-terminal WD40 repeat region and has been shown to form complexes with SNAP-25 and syntaxin 1a, as well as SNAP-23 and syntaxin 4. In general, SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) proteins consist of coiled-coil helices (called SNARE motifs) which mediate the interactions between SNARE proteins, and a transmembrane domain. The SNARE complex mediates membrane fusion, important for trafficking of newly synthesized proteins, recycling of pre-existing proteins and organelle formation. SNARE proteins are classified into four groups, Qa-, Qb-, Qc- and R-SNAREs, depending on whether the residue in the hydrophilic center layer of the four-helical bundle is a glutamine (Q) or arginine (R). Qc-, as well as Qa- and Qb-SNAREs, are localized to target organelle membranes, while R-SNARE is localized to vesicle membranes. They form unique complexes consisting of one member of each subgroup, that mediate fusion between a specific type of vesicles and their target organelle.
Statistics
?
PSSM-Id: 277246
Aligned: 5 rows
Threshold Bit Score: 100.111
Created: 25-Jul-2013
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
heterotetramerzero layer
Conserved site includes 39 residues -Click on image for an interactive view with Cn3D
Feature 1:heterotetramer interface [polypeptide binding site]
Evidence:
  • Structure:1URQ, Rattus norvegicus Neuronal Q-SNAREs/Tomosyn complex, contacts 4A

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1            #  ## #   ## ### ## ##  ## ###### ###### ###### ### ##  # 
1URQ_A          3 HGGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKYK 63   Norway rat
XP_002936417 1045 PGGIEGVKGAASGVVGELARARWALDERGQKIGELEEKTTAMLASADSFSKHAHEMMLKYK 1105 western clawed frog
NP_001093451 1061 PGGIEGMKGAASGIVGDLARARIALDERGQKLSEVEERTAAMMASADSFSKHAHEMMLKCK 1121 zebrafish
XP_004935652 1031 PGGIEGVKGAASGVVGELARARLALDERGQKLGELEEKTAAMLYSADSFSKHAHEMMLKYK 1091 chicken
NP_001121187 1084 PGGIEGVKGAASGVVGELARARLALDERGQKLGDLEERTAAMLSSAESFSKHAHEIMLKYK 1144 human

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap