1SFC,1L4A


Conserved Protein Domain Family
SNARE_SNAP25N_23N

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cd15889: SNARE_SNAP25N_23N 
Click on image for an interactive view with Cn3D
N-terminal SNARE motif of SNAP25 and SNAP23
N-terminal SNARE motifs of SNAP25 and SNAP23, members of the Qb/Qc subfamily of SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) proteins. SNAP23 interacts with STX4 (Qa) and the lysosomal R-SNARE VAMP8. The complex plays a role in transport of secretory granule from trans-Golgi network to the plasma membrane. SNAP25 interacts with Syntaxin-1 (Qa) and the R-SNARE VAMP2 (also called synaptobrevin-2). The complex plays a role in transport of secretory granule from trans-Golgi network to the plasma membrane. Qb/Qc SNAREs consist of 2 coiled-coil helices (called SNARE motifs, one belonging to the Qb subgroup and one belonging to the Qc subgroup), which mediate the interactions with other SNARE proteins, and a transmembrane domain. In general, the SNARE complex mediates membrane fusion, important for trafficking of newly synthesized proteins, recycling of pre-existing proteins and organelle formation. SNARE proteins are classified into four groups, Qa-, Qb-, Qc- and R-SNAREs, depending on whether the residue in the hydrophilic center layer of the four-helical bundle is a glutamine (Q) or arginine (R). Qa-, as well as Qb- and Qc-SNAREs, are localized to target organelle membranes, while R-SNARE is localized to vesicle membranes. They form unique complexes consisting of one member of each subgroup, that mediate fusion between a specific type of vesicles and their target organelle. Their SNARE motifs form twisted and parallel heterotetrameric helix bundles. Other members of the Qb/Qc SNAREs are SNAP29, SNAP47 and SEC9.
Statistics
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PSSM-Id: 277242
Aligned: 25 rows
Threshold Bit Score: 78.4459
Created: 19-Jul-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heterotetramerzero layer
Conserved site includes 41 residues -Click on image for an interactive view with Cn3D
Feature 1:heterotetramer interface [polypeptide binding site]
Evidence:
  • Structure:1SFC, Rattus norvegicus neuronal synaptic fusion complex, contacts 4A
  • Citation:PMID 9759724

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 ##  ## ### ###### ### ## ##  ## ###### ### ## ###### ##  
1SFC_C         16 RRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 80   Norway rat
XP_002435693   31 DLQEEVWDPSVAATRKMLQVCQAAQGVGLKTVATLDEQGEQLNHVGRSLGDITRDLDSVEEDLSK 95   black-legged tick
AEO36761       20 LKMNQTTDESLERTRNMIALCEEAQDAGVKTIVELDKQGEQLDRIEEDMDKINADMKEAEKNLTG 84   Amblyomma maculatum
CBY09406       24 FAIDVFLQKSVNATRRMMQNLNETEETGQNTMIMLNEQGEQLDRIEEGMDTVNNEMKEAEKHLTA 88   Oikopleura dioica
XP_003388483   13 QRIDEVTDETLESTRRMLNMAVDTNQIGVDTLVTLNEQGEKLDNVERRLDEMNVDLKRADKNLKE 77   Amphimedon queenslandica
ACO12792       21 LKANNITDDSLESTRRMISLCEDSEGAGMSSIQALEHQGEQLNRIENGMDGMNAEMAEAEKHLIG 85   salmon louse
XP_002107868   18 AKGSHILNQSLEITRNLVTLTQQTEAIGSQTLVVLNEQGGKLTRIEGGMENINNNMSEAEKSLAD 82   Trichoplax adhaerens
XP_001743132 2378 AARGLTQFKDVAATRRMRHLVVEDQQMNEETLRNLDEQGEQLRRVERGLDGINANTRQAERELTK 2442 Monosiga brevicollis MX1
XP_002107867   22 ERGNKITNESLDSTRRILVIAEETHGIGTKTLETLNTQGEQIDRIEQNMEQINADMHEAEKNLTN 86   Trichoplax adhaerens
CCD76089        1 MQMNAKTDETLDSTRNMVRLCDESTKVGAQTLGKLESQGQQLRGIDSDMDNIREDLHEAQRDLDE 65   Schistosoma mansoni

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