Conserved Protein Domain Family
SNARE_TSNARE1

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cd15877: SNARE_TSNARE1 
SNARE motif of TSNARE1
TSNARE1 is member of the Qa subgroup of SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) proteins, which consist of coiled-coil helices (called SNARE motifs) that mediate the interactions between SNARE proteins, and a transmembrane domain. Its function is unknown, but polymorphisms in human TSNARE1 have been associated with schizophrenia susceptibility. The SNARE complex mediates membrane fusion, important for trafficking of newly synthesized proteins, recycling of pre-existing proteins and organelle formation. SNARE proteins are classified into four groups, Qa-, Qb-, Qc- and R-SNAREs, depending on whether the residue in the hydrophilic center layer of the four-helical bundle is a glutamine (Q) or arginine (R). Qa-, as well as Qb- and Qc-SNAREs, are localized to target organelle membranes, while R-SNARE is localized to vesicle membranes. They form unique complexes consisting of one member of each subgroup, that mediate fusion between a specific type of vesicles and their target organelle. Their SNARE motifs form twisted and parallel heterotetrameric helix bundles. TSNARE1 is part of a subgroup of the Qa SNAREs that also includes syntaxin 7, syntaxin 12 and related proteins.
Statistics
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PSSM-Id: 277230
Aligned: 5 rows
Threshold Bit Score: 90.8553
Created: 16-Jul-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
heterotetramerzero layer
Feature 1:heterotetramer interface [polypeptide binding site]
Evidence:
  • Comment:based on homology to other members of the family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            # ## ###### ### ## ### ## ### ## ###### ###### ###### ###   
NP_001106394 191 LDEIRQKEEAINQIESDMLDVNQIMKDLASIVYEQGDTIDSIEANIETASSHVESANRQLAKAS 254 western clawed frog
AAI43685     415 LEAIRLREEAILQMESNLLDVNQIIKDLASMVSEQGEAVDSIEASLEAASSHAEAARQLLAGAS 478 human
EPQ07964      84 AQLSDAIQRYGAVQTSDLLDVTQILKDLAAVVSEQGEAVDSIEASLEAASSHTEAASQLLAEAS 147 Myotis brandtii
XP_002186727 193 LEAIRQREEAIQQIESDMLDVNQIIKDLASMVHEQGDTIDSIEANIEASSSNVESANEQLAKAS 256 zebra finch
XP_418416    178 LEAIRQREEAIQQIESDMLDVNQIIKDLASMVHEQGDTIDSIEANIETASSNVESANEQLAKAS 241 chicken

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