3B5N


Conserved Protein Domain Family
R-SNARE_Snc1

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cd15874: R-SNARE_Snc1 
Click on image for an interactive view with Cn3D
SNARE motif of Snc1
Saccharomyces cerevisiae SNARE protein Snc1p forms a complex with synaptobrevin homolog Sso1p (Qa) and the SNAP-25 homolog Sec9p (Qb/c) which is involved in exocytosis. Snc1 is a member of the R-SNARE subgroup of SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) proteins, which consist of coiled-coil helices (called SNARE motifs) that mediate the interactions between SNARE proteins, and a transmembrane domain. The SNARE complexes mediate membrane fusion, important for trafficking of newly synthesized proteins, recycling of pre-existing proteins and organelle formation. SNARE proteins are classified into four groups, Qa-, Qb-, Qc- and R-SNAREs, depending on whether the residue in the hydrophilic center layer of the four-helical bundle is a glutamine (Q) or arginine (R). Qa-, as well as Qb- and Qc-SNAREs, are localized to target organelle membranes, while R-SNARE is localized to vesicle membranes. They form unique complexes consisting of one member of each subgroup, that mediate fusion between a specific type of vesicles and their target organelle.
Statistics
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PSSM-Id: 277227
Aligned: 13 rows
Threshold Bit Score: 84.7263
Created: 21-Nov-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heterotetramerzero layer
Conserved site includes 42 residues -Click on image for an interactive view with Cn3D
Feature 1:heterotetramer interface [polypeptide binding site]
Evidence:
  • Structure:3B5N, Saccharomyces cerevisiae plasma membrane SNARE complex, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ##  ## ###### ### ## ## ### ## ### ###### ######  ## ##  # 
3B5N_A         2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61  baker's yeast
EMR10968      25 SRTAMIQAQIDDTVGIMRENINKVAQRGERLDILQDKTENLATSAQGFRRGANRVRKQMW 84  Pneumocystis murina B123
EGS23000      23 SVTERLQEELDGAKRALHHNIDSLAERGDRLEDLRDKSDRLADSAQSFRRGANQVRKKMW 82  Chaetomium thermophilum var. thermo...
Q0TXR8        27 HRNEAIQAEINGAIQEMDRNVRQLKAREERLDSLQNKTDNLAQSAQGFRRGANKVRKQMW 86  Phaeosphaeria nodorum SN15
NP_594120     30 MKTAAIQQQIDDTVGIMRENISKVSERGERLDSLQDKTDNLAVSAQGFRRGANRVRKKMW 89  Schizosaccharomyces pombe 972h-
XP_001257483  30 PRTREIDKKIQETVDTMRSNIFKVSERGERLDSLQDKTDNLAVSAQGFRRGANRVRKQMW 89  Neosartorya fischeri NRRL 181
XP_003659892  26 SRFEEANKEIQAAKLELQKNAERLMDRRERIEDLHEQSNKLADSAQTFRRSANRVRKQMW 85  Myceliophthora thermophila ATCC 42464
ELR06837      27 VDTEQLQQEIDGATAKMQHNVDKLAQRGENLNSLQDKTDNLAVSAQGFNQGANRVRQKMW 86  Geomyces destructans 20631-21
EFY93711      34 DKIQTIHKKLAEATDIAGQNINSMKDRGENLDGLQDKTSNLADSSQQFRRGANRVRKQMW 93  Metarhizium acridum CQMa 102
EIF46561      44 AKLHNLQNTLDETAGIMRNNLEAINQRGETLEDMDTRANELSNNAKMFNRSANQVRKDMW 103 Dekkera bruxellensis AWRI1499
Q759C2        20 SKAAALKAEIDDTVGIMRDNINKVAERGERLTSIQDKADNLAVSAQGFKRGANRVRKQMW 79  Eremothecium gossypii
EMC94516      22 THAEAVQREINDVTNIVRQNLQATSQRGERLDNLENKTNALSGSANQFRTRANRVRKDMW 81  Baudoinia compniacensis UAMH 10762
XP_001222320  28 DRFGVMKEELNGAIRAASHNIESVRDRGERLDNLQDKSAGLNAAAQDFHGRAGKVRRQMW 87  Chaetomium globosum CBS 148.51

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