1JTH,3B5N,1SFC


Conserved Protein Domain Family
SNARE_SNAP25N_23N_29N_SEC9N

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cd15861: SNARE_SNAP25N_23N_29N_SEC9N 
Click on image for an interactive view with Cn3D
N-terminal SNARE motif of SNAP25, SNAP23, SNAP29, and SEC9
N-terminal SNARE motif of members of the Qb/Qc subfamily of SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) proteins. Qb/Qc SNAREs consist of 2 coiled-coil helices (called SNARE motifs, one belonging to the Qb subgroup and one belonging to the Qc subgroup), which mediate the interactions with other SNARE proteins, and a transmembrane domain. In general, the SNARE complex mediates membrane fusion, important for trafficking of newly synthesized proteins, recycling of pre-existing proteins and organelle formation. SNARE proteins are classified into four groups, Qa-, Qb-, Qc- and R-SNAREs, depending on whether the residue in the hydrophilic center layer of the four-helical bundle is a glutamine (Q) or arginine (R). Qa-, as well as Qb- and Qc-SNAREs, are localized to target organelle membranes, while R-SNARE is localized to vesicle membranes. They form unique complexes consisting of one member of each subgroup, that mediate fusion between a specific type of vesicles and their target organelle. Their SNARE motifs form twisted and parallel heterotetrameric helix bundles. Examples for members of the Qb/Qc SNAREs are SNAP23, SNAP25, SNAP29, SNAP47 and SEC9.
Statistics
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PSSM-Id: 277214
Aligned: 49 rows
Threshold Bit Score: 54.1164
Created: 4-Apr-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heterotetramerzero layer
Conserved site includes 47 residues -Click on image for an interactive view with Cn3D
Feature 1:heterotetramer interface [polypeptide binding site]
Evidence:
  • Structure:3B5N, Saccharomyces cerevisiae plasma membrane SNARE complex, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  ###### ###### ##  ## ###### ## ### ###### ## ### ## ### ## #
1JTH_A        16 RRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKEAEKNLTD 80  Norway rat
3B5N_C         1 GSIKFTKQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAE 65  baker's yeast
EKX40250      28 QEILVKASQNSEKIRQMVRQTDQTRQVAGETLTVLDQQSEQLKRMHGEVDKIEANLNFADRTIRG 92  Guillardia theta CCMP2712
XP_002182485 131 KEASGIQDKTQESLMNTRNRITESKEVGISTLEELERQRDVINSIEKETDRIDDNLARAEVLLKQ 195 Phaeodactylum tricornutum CCAP...
XP_002669549 154 KEIYETQGDSLDIVKRLIDKADETKAIAAESMEMLKRQREQLERIDKEMDELGSNITRGSNELKS 218 Naegleria gruberi strain NEG-M
CBK21501      23 QHALQTQGKTIDAAKNTLLLLHETKQVALETTETLANQTDQIGGMKGNVQDIDNQLKRSEQLIRT 87  Blastocystis hominis
XP_004360312 120 MQARAIQEKDLQATDRILEEVIQMNTVGTSTLEEMSKQEEQMKRIAKGMDEVDSNLKLAQRQIRV 184 Dictyostelium fasciculatum
EJK74344     149 NEMNDIQDKTKSSIMNTKNMVSASKQVGEATMEELLRQREQIRNIDDEVMRVDDNLNRADKLIQK 213 Thalassiosira oceanica
CBN76901     126 TEADQYQDKTEAAYKNMIGVLQETEATADTTAVELTKQREQLARITEDVTEIDSLLTRADRLVKV 190 Ectocarpus siliculosus
EGF76834     119 KQALLIQDKTQESTARTQRILDETIQVGVTVQTELKQQGEKIRQVDEDVERIESNLRRADKQMRV 183 Batrachochytrium dendrobatidis...

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