Conserved Protein Domain Family
SNARE_VAM7

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cd15858: SNARE_VAM7 
SNARE motif of VAM7
Fungal VAM7 (vacuolar morphogenesis protein 7) is a member of the Qc subfamily of SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) protein family involved in vacuolar protein transport and membrane fusion. SNARE proteins consist of coiled-coil helices (called SNARE motifs) which mediate the interactions between SNARE proteins, and a transmembrane domain. The SNARE complex mediates membrane fusion, important for trafficking of newly synthesized proteins, recycling of pre-existing proteins and organelle formation. SNARE proteins are classified into four groups, Qa-, Qb-, Qc- and R-SNAREs, depending on whether the residue in the hydrophilic center layer of the four-helical bundle is a glutamine (Q) or arginine (R). Qc-, as well as Qa- and Qb-SNAREs, are localized to target organelle membranes, while R-SNARE is localized to vesicle membranes. They form unique complexes consisting of one member of each subgroup, that mediate fusion between a specific type of vesicles and their target organelle. Their SNARE motifs form twisted and parallel heterotetrameric helix bundles.
Statistics
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PSSM-Id: 277211
Aligned: 63 rows
Threshold Bit Score: 66.7566
Created: 18-Jul-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
heterotetramerzero layer
Feature 1:heterotetramer interface [polypeptide binding site]
Evidence:
  • Comment:based on homology to other members of the family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #### ### ### ## ###### ## ##  ## ### ### ## ##  ## ## #
EHK41462     303 MESQDQAIDQLAAIIRRQKEMGIQMNDEVERQTELLDSLDEDVDRVEGKVRVANRRLKK 361 Trichoderma atroviride IMI 206040
EGX49823     304 MKSQDGDLEALLKAVGRQKQVGVEIGRELDEQNQLLDSLGVDVERVNDKIRVVKKRVKN 362 Arthrobotrys oligospora ATCC 24927
CCA71820     300 MDDQDSQLDNLSAILQRQMHIGMAISTEVEEQNKILDEMNEDVDRVTDKLKRGNKLMTK 358 Piriformospora indica DSM 11827
XP_002172574 275 MDTQDQQVESLLPLIQRQKELSMAICNEVEQQNDMLDEVSAYTGHTQHKLQKTRGRLRR 333 Schizosaccharomyces japonicus yFS275
EPB88906     342 MEDQDQQVQQFGAILARQKQLGISIGHELETQNQILDELDGDVDRTQTKLKFANKKLQK 400 Mucor circinelloides f. circinelloid...
EPB92908     335 MRDQDLHIEQFSQLLGRQKELGVAINHELENQIDILESLDIQVDNTQTKLAFANKKLSK 393 Mucor circinelloides f. circinelloid...
CCG83212     259 IQQQDDLLSSLLPILQRQKELGNIIGQELDEQNGMLDELGDSMDALDAKLKKGGKQITK 317 Taphrina deformans PYCC 5710
EMR10535     288 LNKQDEQLGAFLPILRKQKEIVTAIADELDMQNDMLNELDESVQKTHLKLKSAKKKSEQ 346 Pneumocystis murina B123
ESA08803     290 MEDQDSHVEQFSAILSRHKHIGLAIGQELDYQNQLLNELDGDLDRTADKLRFTTRKMNS 348 Rhizophagus irregularis DAOM 181602
EPY50000     287 LTNQDSQAETLLPIIKRQKELSMTINNELIEQNAMLDDLSHDTDQNRKKMRRTKDRLRR 345 Schizosaccharomyces sp. OY26

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