4GL2,2RQB


Conserved Protein Domain Family
MDA5_C

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cd15807: MDA5_C (This model is not part of the current CDD release)
C-terminal domain of Melanoma differentiation-associated protein 5, a cytoplasmic viral RNA receptor
Melanoma differentiation-associated protein 5 (MDA5) is also called Interferon-induced helicase C domain-containing protein 1 (IFIH1) or RIG-I-like receptor 2 (RLR-2). It is one of three members of the RLR family. RLRs are cytoplasmic RNA receptors that recognize non-self RNA and act as molecular sensors to detect viral pathogens. It has been shown to detect viruses from the Picornaviridae and Caliciviridae families. RLRs are characterized by a central DExD/H-box helicase domain and a C-terminal domain, both of which are responsible for binding viral RNA. The helicase domain catalyzes the unwinding of double stranded RNA in an ATP-dependent manner. RIG-I and MDA5 also contain two N-terminal caspase activation and recruitment domains (CARDs), which initiate downstream signaling upon viral RNA sensing.
Statistics
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PSSM-Id: 501552
Aligned: 8 rows
Threshold Bit Score: 205.799
Created: 27-Oct-2014
Updated: 30-Oct-2024
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding sitedsRNA binding
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:C C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:4GL2: Human MDA5 C-terminal domain binds Zn
  • Structure:2RQB: Human MDA5 C-terminal domain binds Zn

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #  #                                                   #  #              
4GL2_A        582 PSLITFLCKNCSVLACSGeDIHVIEKMHHVNMTPEFkeLYIVRENKTLQKKcaDYQINGEIICK-CGQAWGTMMVHkGLD 660  human
2RQB_A         10 PSLITFLCKNCSVLACSGeDIHVIEKMHHVNMTPEFkeLYIVRENKALQKKcaDYQINGEIICK-CGQAWGTMMVHkGLD 88   human
AEM00325      975 PSLITFLCKNCHKLICSGeDIQVIENMHHVSVKKDFqhLYHKRENRTLQDKhaDYQTNVEIICKdCGQVWGNMMVYrGLD 1054 chicken
XP_006004403  912 PSIVTLHCRNCNVRVCSGkDIQVIESMHHVNVTKEFktFYVEKENPAVQDKflDYQTSSEITCRkCGQTWGPLMVHrGLT 991  coelacanth
ADG85722      102 PSEVSFSCRGCNKDVCRGeDIEVVSQMHHVVVSTEFrsLYNKKDNTNLQERlvEYETNQFVACNtCGQRWGSMMLYrAIE 181  Atlantic cod
NP_001295492  864 PSKIRLSCRQCSVFVCSGeDIEIIEKMHHVNVTKQFrkLFIVRENASLQERllDYETNGVIACKkCGQQWGSMMLYrSTE 943  zebrafish
XP_018091335  869 PSLVTFHCKKCSKQVCCGtDIQVIATAHHVNISQKFktLYSKGANKTLQEKfaDYQINGDIICKaCGKTWGTMMVHkGIE 948  African clawe...
XP_007888035  895 YSKVAFHCYGCSKLACSGkDVQVIESMHHVNITKEFkdLYGVRENRALQEKslDYQTNGEIYCKeCAQTWGSMMVHrGVN 974  elephant shark
Feature 1                                               
4GL2_A        661 LPCLKIRNFVVVFkn-nSTKKQYKKWVELpITFPNLDY 697  human
2RQB_A         89 LPCLKIRNFVVVFkn-nSTKKQYKKWVELpITFPNLDY 125  human
AEM00325     1055 LPCLKIRNFVVAFedkkTTKEIFKKWGELpIIFPDFDY 1092 chicken
XP_006004403  992 LPCLKIKHFVVELklktTERKTYKQWNELsLRFPDFDY 1029 coelacanth
ADG85722      182 LPSLHVKNLVVTCk--gKKISKCAKWKELdVCFPAFDL 217  Atlantic cod
NP_001295492  944 CPCLHIKNFVVTYg---SKKKTFSKWRELsISFPAFDY 978  zebrafish
XP_018091335  949 VPCLQISNFVVKYddkkMTKDTYNKWSELpIKFPVFKY 986  African clawed frog
XP_007888035  975 LPCLSIKNFVVYIdekhLQKQTYKKWNEVpFRLPKFDF 1012 elephant shark

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