3OG8,4GL2,3EQT


Conserved Protein Domain Family
RLR_C

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cd15804: RLR_C 
Click on image for an interactive view with Cn3D
C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors
Retinoic acid-inducible gene (RIG)-I-like Receptors (RLRs) are cytoplasmic RNA receptors that recognize non-self RNA and act as molecular sensors to detect viral pathogens. They play crucial roles in innate antiviral responses, including the production of proinflammatory cytokines and type I interferon. There are three RLRs in vertebrates, RIG-I, LGP2, and MDA5. They are characterized by a central DExD/H-box helicase domain and a C-terminal domain, both of which are responsible for binding viral RNA. The helicase domain catalyzes the unwinding of double stranded RNA in an ATP-dependent manner. RIG-I and MDA5 also contain two N-terminal caspase activation and recruitment domains (CARDs), which initiate downstream signaling upon viral RNA sensing. They may detect partially overlapping viral substrates, including dengue virus, West Nile virus (WNV), reoviruses, and several paramyxoviruses (such as measles virus and Sendai virus). LGP2 lacks CARD and may play a regulatory role in RLR signaling. It may cooperate with either RIG-I or MDA5 to sense viral RNA.
Statistics
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PSSM-Id: 276942
Aligned: 23 rows
Threshold Bit Score: 121.653
Created: 22-Oct-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding sitedsRNA binding
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:C C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:3EQT: Human LGP2 C-terminal domain binds Zn.
  • Structure:3OG8: Human RIG-I C-terminal domain binds Zn.
  • Structure:4GL2: Human MDA5 binds Zn.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #  #                                                      #    #            
3OG8_A          6 KKLLCRKCKALACYTadVRVIEeSHYTVLGDAFkeCFVSRPHPKPkqf----ssFEKRAKIFCArqnCSHD-WGIHVKYk 80   human
3EQT_A         12 VQLLCINCMVAVGHGsdLRKVEgTHHVNVNPNFsnYYNVSRDPVVinkv--fkdWKPGGVISCRn--CGEV-WGLQMIYk 86   human
Q93413        948 YKLMCSNCSKEFCKSiyIKKVF-SNYMVFDPSVw-RFLHVESKRKvsky-lsedNQPLSDIKCFh--CKLD-VGRAYKIr 1021 Caenorhabditi...
XP_002639934  654 YRLTCTSCSSFFSRStaVKKVY-SNYMIFDNDVwsRFGIESRRKKpnry-lneeTQALSVLKCLs--CKSD-VGKAYKMr 728  Caenorhabditi...
ELU14771      868 HNLVCGKCKAYACPSddLRVIEgVHHVVIEEDFneNCRIEPDPERkty----agWEQTEKMFCIn--CGHY-WGPRCRYl 940  Capitella teleta
EKC24603     1069 YVLRCQKCSKYICMSneVRKIQnAHHACICDDIkeRVLGQRLPRPqfed--vdlKCAVGKLLCRs--CGSD-LGNISIYk 1143 Pacific oyster
XP_009024874  598 YEIRCLKCTHFAANSgdMRTIEnAHHVVVDPDVkeRITIKPHPRPlai---tpvYKKFGKVHCKk--CDFD-WGIMASYk 671  Helobdella ro...
EGT46817      812 YKLNCVGCSTTFCMSsdIKKVY-SNYMAFDPAAw-QFFTVESKKKkpnsylsedTQPLSILKCAk--CVTTvIGKAYKMr 887  Caenorhabditi...
XP_009050249  557 FQLVCFKCTQLKIDNkfIKTINnSHHVVIDPEFmlKVDLRPDQSPrkp---fdgIQITGKIHCKk--CHNH-LGVMFRYk 630  owl limpet
XP_003095565  786 FTVNCAQCQWTFCKStdIKKVS-SNYMAFHPMVwdNVSVESQKKApsyr--nedTQPLSILKCHk--CQHL-VGKAYKMr 859  Caenorhabditi...
Feature 1                                                   
3OG8_A         81 TFEIPVIKIESFVVEDia-tGVQTLYSKWKDf---hFEKIPF 118  human
3EQT_A         87 SVKLPVLKVRSMLLETp---QGRIQAKKWSRv---pFSVPDF 122  human
Q93413       1022 GTYLPQLSVKALTFVQes-dYSSMTKAKWSDveqdlFYISEA 1062 Caenorhabditis elegans
XP_002639934  729 GVYLPQLDVKAVTFAPenhdEGTTTRQKWSAvendlFWIGEA 770  Caenorhabditis briggsae
ELU14771      941 NQMYPVIKIEQFIIFTp--qEEMLKIQKWKDc---pFYIEKY 977  Capitella teleta
EKC24603     1144 NAQFPILKIEGLLMEDn--mGRRDVKKKWKSv---pFLVKEI 1180 Pacific oyster
XP_009024874  672 GVPFPILKICSFIVRNke-tREQANVKKWKDv---qFALAAL 709  Helobdella robusta
EGT46817      888 GVYLPQIDVKSVFFVEen-sSESKTAKKWSSveqelFYVGEA 928  Caenorhabditis brenneri
XP_009050249  631 GLMFPAVRVESFQILTs--sGQIMLLRKWKDl---pFLVKEI 667  owl limpet
XP_003095565  860 GVYLPQFAVKNVNFVAqnndNGTATKAHWSGvqdelFFIGEA 901  Caenorhabditis remanei

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