3OG8,4GL2,3EQT


Conserved Protein Domain Family
RLR_C

?
cd15804: RLR_C (This model is not part of the current CDD release)
C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors
Retinoic acid-inducible gene (RIG)-I-like Receptors (RLRs) are cytoplasmic RNA receptors that recognize non-self RNA and act as molecular sensors to detect viral pathogens. They play crucial roles in innate antiviral responses, including the production of proinflammatory cytokines and type I interferon. There are three RLRs in vertebrates, RIG-I, LGP2, and MDA5. They are characterized by a central DExD/H-box helicase domain and a C-terminal domain, both of which are responsible for binding viral RNA. The helicase domain catalyzes the unwinding of double stranded RNA in an ATP-dependent manner. RIG-I and MDA5 also contain two N-terminal caspase activation and recruitment domains (CARDs), which initiate downstream signaling upon viral RNA sensing. They may detect partially overlapping viral substrates, including dengue virus, West Nile virus (WNV), reoviruses, and several paramyxoviruses (such as measles virus and Sendai virus). LGP2 lacks CARD and may play a regulatory role in RLR signaling. It may cooperate with either RIG-I or MDA5 to sense viral RNA.
Statistics
?
PSSM-Id: 501549
Aligned: 32 rows
Threshold Bit Score: 93.9572
Created: 22-Oct-2014
Updated: 30-Oct-2024
Structure
?
Program:
Drawing:
Aligned Rows:
 
Zn binding sitedsRNA binding
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:C C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:3EQT: Human LGP2 C-terminal domain binds Zn.
  • Structure:3OG8: Human RIG-I C-terminal domain binds Zn.
  • Structure:4GL2: Human MDA5 binds Zn.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1             #  #                                                         #        #     
3OG8_A          6 KKLLCRkCKALACYTadVRVIEe-SHYTVLGDAFk-eCFVSRPHPKPkqf-----ssFEKRAKIFCArq----nCSHDWG 74   human
3EQT_A         12 VQLLCInCMVAVGHGsdLRKVEg-THHVNVNPNFs-nYYNVSRDPVVinkv---fkdWKPGGVISCRn------CGEVWG 80   human
XP_029658486  973 YELKCTsCNCTAAESsdFRNFEe-KCYVIVNLDFr--KKISISRSRPsil----fddVKRIGSIFCDn------CGLYWG 1039 East Asian co...
XP_030839793  588 HSYHCKhCDALVCHSadIRIVPg-GHHVVIHRQIf-sKIRIVASGGVgqdpghwssvEHAKKEIRCAde----rCDTKLG 661  purple sea ur...
XP_030853694  726 VKLLCNkCEQFICKSsdLERRL--SNYTCLDPTIa-eRTRNVRTGCIif------reSKTIGIVKCR-------CGNQLG 789  purple sea ur...
XP_013399074 1411 VKVLCKeCKTILCRGnfIIKKG--SHYICVDPEFp-kKIKVETVQRRdf------rtDAQIGVSICRqt---dtCGQSLG 1478 Lingula anatina
XP_035677687  856 VKVYCRqCNRAVCDG--THIVHkgSNYICREPSLpdkCEIVCKKPQVyr-------tTDNIGLLFCGnp----tCRNQYG 922  Florida lancelet
XP_030846459 1206 YTLVCRnCRKFICNAhfLLKRG--THVSCQDSSIk-eRLSIAGLTTPirg-----sdDDTTGVLKCTgqkdgqpCQNKLG 1277 purple sea ur...
NP_001368373  629 YKIICKkCEAILCTSkdIRSRN--TQYLVCDPGFw-sLVRKTRLTDEqqa----likYNATGSINCRre----nCGLKLG 697  Caenorhabditi...
XP_006821027  879 ASLFCRkCSVVACNAkeLRKIEn-MHHVNPEDEFk-eKYKLEEYPESief-----anIENVGKLLCGs------CNKNWG 945  Saccoglossus ...
Feature 1                                                                
3OG8_A         75 IHVKYk----TFEIPVIKIESFVVEDia----tGVQTLYSKWKDf---hFEKIPF 118  human
3EQT_A         81 LQMIYk----SVKLPVLKVRSMLLETp------QGRIQAKKWSRv---pFSVPDF 122  human
XP_029658486 1040 NQLVYk----HTIFDCISIKQFKIVPe-----gKDPILAKKWLKv---pFRDAVQ 1082 East Asian common octopus
XP_030839793  662 SILKCs----NRMLLAFSIKTLRLRNt-----aSTTKTYKSWGSl---pFIFHKE 704  purple sea urchin
XP_030853694  790 QALEFkrlhlWKPGYNLSPKSFFFMYnd---dpNSKRVFAKWKKv---dFPIASE 838  purple sea urchin
XP_013399074 1479 PVLEYkqgsrRKGYTLSKDKIMLLYPg-----kPGLVQVKKWPSv---cFKIQEE 1525 Lingula anatina
XP_035677687  923 PIIKYkk-gqEETAYGMNVKSFLFDFg-----dGELRGIAKLSKa---pFDITEE 968  Florida lancelet
XP_030846459 1278 LAIDFkr-leIEEGYGLDAKGFFFSYleglhadYVGKEFDQWDDi---dFFIYLE 1328 purple sea urchin
NP_001368373  698 QLIEVn----TVDLPCLSALSIVLLVeg----tDKRIIVKKWKNildkyFTPTEI 744  Caenorhabditis elegans
XP_006821027  946 TMIVYd----GARLPCISIKNFGLKFn-----tGVILAPKKWKDv---pFEIPAL 988  Saccoglossus kowalevskii

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap