2KWJ


Conserved Protein Domain Family
PHD1_DPF3

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cd15692: PHD1_DPF3 
Click on image for an interactive view with Cn3D
PHD finger 1 found in D4, zinc and double PHD fingers family 3 (DPF3)
DPF3, also termed BRG1-associated factor 45C (BAF45C), or zinc finger protein cer-d4, is encoded by a neuro-specific gene, cer-d4. It functions as a new epigenetic key factor for heart and muscle development and may be involved in the transcription regulation of neuro-specific gene clusters. It interacts with the BAF chromatin remodeling complex and binds methylated and acetylated lysine residues of histone 3 and 4. DPF3 contains a nuclear localization signal in the N-terminal region, a Cys2His2 (C2H2) zinc finger or Kruppel-type zinc-finger and a sequence of negatively charged amino acids in the central region, and a cysteine/histidine-rich region that is composed of two adjacent plant homeodomain (PHD) fingers (d4-domain) in the C-terminal part of the molecule. This model corresponds to the first PHD finger.
Statistics
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PSSM-Id: 277162
Aligned: 4 rows
Threshold Bit Score: 109.39
Created: 14-Aug-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #                  #  #    #  #                 #  # 
2KWJ_A         3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59  human
P58270       310 YCDFCLGGSNMNKKSGRPEELVSCSDCGRSGHPTCLQFTTNMTEAVKTYQWQCIECK 366 chicken
NP_001265342 255 YCDFCLGDSSINKKSGQPEELVSCADCGRSGHPTCLQFTVNMTEAVKTYQWQCIECK 311 western clawed frog
XP_006000563 261 YCDFCLGGSTMNKKTGKPEELVSCSDCGRSGHPTCLQFTVNMTDSVKTYQWQCIECK 317 coelacanth

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