2KGG


Conserved Protein Domain Family
PHD3_KDM5A

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cd15686: PHD3_KDM5A 
Click on image for an interactive view with Cn3D
PHD finger 3 found in Lysine-specific demethylase 5A (KDM5A)
KDM5A, also termed Histone demethylase JARID1A, or Jumonji/ARID domain-containing protein 1A, or Retinoblastoma-binding protein 2 (RBBP-2 or RBP2), was originally identified as a retinoblastoma protein (Rb)-binding partner and its inactivation may be important for Rb to promote differentiation. It is involved in transcription through interacting with TBP, p107, nuclear receptors, Myc, Sin3/HDAC, Mad1, RBP-J, CLOCK and BMAL1. KDM5A functions as a trimethylated histone H3 lysine 4 (H3K4me3) demethylase that belongs to the JARID subfamily within the JmjC proteins. It also displays DNA-binding activities that can recognize the specific DNA sequence CCGCCC. KDM5A contains the catalytic JmjC domain, JmjN, the BRIGHT domain, which is an AT-rich interacting domain (ARID), and a Cys5HisCys2 zinc finger, as well as three plant homeodomain (PHD) fingers. This model corresponds to the third PHD finger.
Statistics
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PSSM-Id: 277156
Aligned: 3 rows
Threshold Bit Score: 77.4182
Created: 12-Aug-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteH3K4me3 binding
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #    #            #   #    #  #              #  # 
2KGG_A          1 SVCAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52   human
XP_002941946 1631 AVCAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSSEMAENEDYICTNCS 1682 western clawed frog
EMC80287     1566 AVCAAQNCQRPCKDKVDWVQCDGGCDEWFHQICVGVSPEMAENEDYICINCA 1617 rock pigeon

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