Conserved Protein Domain Family
ePHD_JMJD2

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cd15675: ePHD_JMJD2 
Extended PHD finger found in Jumonji domain-containing protein 2 (JMJD2) family of histone demethylases
The extended plant homeodomain (ePHD) zinc finger is characterized as Cys2HisCys5HisCys2His. This model includes the ePHD finger of JMJD2 proteins. JMJD2 proteins, also termed lysine-specific demethylase 4 histone demethylases (KDM4), have been implicated in various cellular processes including DNA damage response, transcription, cell cycle regulation, cellular differentiation, senescence, and carcinogenesis. They selectively catalyze the demethylation of di- and trimethylated H3K9 and H3K36. This model contains three JMJD2 proteins, JMJD2A-C, which all contain jmjN and jmjC domains in the N-terminal region, followed by a canonical PHD finger, this non-canonical ePHD finger, and a Tudor domain. JMJD2D is not included in this family, since it lacks both PHD and Tudor domains and has a different substrate specificity. JMJD2A-C are required for efficient cancer cell growth.
Statistics
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PSSM-Id: 277145
Aligned: 11 rows
Threshold Bit Score: 203.746
Created: 30-Mar-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteputative
Feature 1: Zn binding site [ion binding site], 12 residue positions
Conserved feature residue pattern:C C H C C C C C H C C HClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structure evidence that human Borjeson-Forssman-Lehmann syndrome-associated protein PHF6 (PDB 4NN2) binds three Zn2+ ions through its ePHD finger
  • Comment:The extended PHD finger is characterized by Cys2HisCys5HisCys2His.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #                 #  #                               #  #                  # 
O94953        797 CCLCNLRGGALQM-TTDRRWIHVICAIAVPEarFLNVIERHPVDISAIPeqRWKLKCVYCRKrmk-----kvsGACIQCS 870  human
O75164        775 CCLCSLRGGALQR-ANDDRWVHVSCAVAILEarFVNIAERSPVDVSKIPlpRFKLKCIFCKKrrk-----rtaGCCVQCS 848  human
Q9H3R0        755 CCLCNLRGGALKQ-TKNNKWAHVMCAVAVPEvrFTNVPERTQIDVGRIPlqRLKLKCIFCRHrvk-----rvsGACIQCS 828  human
XP_002601436  750 CCLCVMRGGALKA-TTTGRWAHIICAIAVQEvsFESVQARGPINTSKVPnaRIRLKCCYCKKimkk---gvnmGACIQCS 825  Florida lancelet
XP_002405956  654 CCLCTLRGGALKQ-TVEGRWAHLLCALLVPEvhVGEGPTRSPVDVRHITpqRARLRCWYCHKlrdllgrpsetGACIQCT 732  black-legged ...
XP_005110555 1997 CAVCCLRGGALKP-TTDGRWAHIVCALAIGEafFKNVRARAPINIAKITaeRFKLKCSLCSHkleps--vshqTACVQCS 2073 California se...
XP_006813368  796 CKLCCLRGGALKP-TTDNNWVHMVCSIAIPDvsFVNVSHREPVDISRIRpaRLRLKCGYCYPivkq----phiGVCIQCS 870  Saccoglossus ...
XP_002153961  421 CCLCNLKGGALKR-TTDGAWCHIVCAIAFPDvtFSNITTRGPINISNLDpaRKKLKCLYCSQhsss---mkhmGACLQCK 496  Hydra vulgaris
ELT97210      738 CCLCVLRGGALKP-TDRGEWAHVVCALNIPDvkFSDQLRSVIVTSNINPv-RLKLKCVYCQEitkd---sekvGICTQCS 812  Capitella teleta
ESO92421      148 CEVCFLKGGALKQ-TTSQQWVHLICALSLNDikIRNVEEKKDIVIDNIPqaRYKLKCCYCSPltkn---wskmTPCMQCS 223  owl limpet
XP_009859394  728 CCLCCMRGGAFKPvNVESIWAHVVCAIAIPDvyFEQPVNRTNINISKIQskRLKLKCIYCKDsps-----edyGVCLQCC 802  vase tunicate
Feature 1            #    #  #                    #  #
O94953        871 yeHCSTSFHVTCAHAAGVlmepdDWPYVVSITCLKH 906  human
O75164        849 hgRCPTAFHVSCAQAAGVmmqpdDWPFVVFITCFRH 884  human
Q9H3R0        829 ygRCPASFHVTCAHAAGVlmepdDWPYVVNITCFRH 864  human
XP_002601436  826 agKCALSFHVTCAHAAGMamepgDWPFSVYVICQRH 861  Florida lancelet
XP_002405956  733 fgRCTTAFHVTCAHAAGVsfetyDWPLPIFVTCTKH 768  black-legged tick
XP_005110555 2074 qgRCTKAFHVTCAYAAGVkfeisDWPVPIYISCARH 2109 California sea hare
XP_006813368  871 lgKCVSSFHVTCAYAAGVtmepdDWPYPVSVICLKH 906  Saccoglossus kowalevskii
XP_002153961  497 crKCAVSFHVTCSFHYGIalrfgDWPTLIEVVCPKH 532  Hydra vulgaris
ELT97210      813 tgKCATAFHVTCAHAAGIqfrtsDWPNPIHLTCTKH 848  Capitella teleta
ESO92421      224 hgKCFTAFHVTCAHAAGMqfetsDWPHPVYVTCTKH 259  owl limpet
XP_009859394  803 tgNCTVSFHVTCAQVAGVpiepgNWPYPVYAYCHQH 838  vase tunicate

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