4NN2


Conserved Protein Domain Family
ePHD_PHF6_like

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cd15673: ePHD_PHF6_like 
Click on image for an interactive view with Cn3D
Extended PHD finger found in PHD finger protein 6 (PHF6) and PHD finger protein 11 (PHF11)
The extended plant homeodomain (ePHD) zinc finger is characterized as Cys2HisCys5HisCys2His. This model includes the two ePHD fingers of PFH6 and the single ePHD finger of PFH11. PHF6, also termed the X-linked mental retardation disorder Borjeson-Forssman-Lehmann syndrome-associated protein, is a nucleolus, ribosomal RNA promoter-associated protein that regulates cell cycle progression by suppressing ribosomal RNA synthesis. It has been implicated in cell cycle control, genomic maintenance, and tumor suppression. PHF6 shows transcriptional repression activity through directly interacting with the nucleosome remodeling and deacetylation complex component RBBP4. PHF6 contains two non-canonical ePHD fingers. PHF11, also termed BRCA1 C-terminus-associated protein, or renal carcinoma antigen NY-REN-34, is a transcriptional co-activator of the Th1 effector cytokine genes, interleukin-2 (IL2) and interferon-gamma (IFNG), co-operating with nuclear factor kappa B (NF-kappaB). It is involved in T-cell activation and viability. Polymorphisms within PHF11 are associated with total IgE, allergic asthma and eczema.
Statistics
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PSSM-Id: 277143
Aligned: 9 rows
Threshold Bit Score: 157.169
Created: 19-Mar-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteputative
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 12 residue positions
Conserved feature residue pattern:C C H C C C C C H C C HClick to see conserved feature residue pattern help
Evidence:
  • Structure:4NN2; Human Borjeson-forssman-lehmann Syndrome Associated Protein PHF6 binds three Zn2+ ions through its ePHD finger.
  • Comment:The extended PHD finger is characterized by Cys2HisCys5HisCys2His.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                          #  #                                              
4NN2_A         8 CGFCHVGEeeneargkl---hifnakkaAAHYKCMLFSSgtvqltttsr------------------------------- 53  human
Q8IWS0        17 CGFCKSNRdkecgqll-----isenqkvAAHHKCMLFSSalvsshsdne------------------------------- 60  human
Q9UIL8        45 CALCPKDVeynvlyf-------aqseniAAHENCLLYSSglvecedqdpl------------------------------ 87  human
XP_006813687 259 CGFCKNGEdikkygk------limhekdSAHYLCMFNSSglglevspysekfvnfgegfdankvrqemrrgrklfnssgl 332 Saccoglossus ko...
Q28HQ8        11 CAFCGLREqnketgrl----lktsddkiTAHLNCTIFSPkvittvssne------------------------------- 55  western clawed ...
XP_006009747   3 CAFCHSPSqnqitgk------lfikkgvAAHQNCMLFSPklvtrgsenl------------------------------- 45  coelacanth
ESO84252       6 CGFCRHGKevkeecgelhhvvtasgkpcTAHHKCMQYSAllvqykseh-------------------------------- 53  owl limpet
ELT92557       7 CGFCQRGReaqnicgklwkntskkgdvvAAHHKCMQYSSglaqylsyp-------------------------------- 54  Capitella teleta
XP_697646     14 CALCKTSDetettgp------lsskediSAHQNCLLFSSniycknspty------------------------------- 56  zebrafish
Feature 1                                          #    #                    #    #    #  #      
4NN2_A        54 ------------aefgdfdiktVLQEIKRGKRMKCt--LCSQp------------GATIGCeikaCVKTYHYHCGVQDKa 107 human
Q8IWS0        61 -------------slggfsiedVQKEIKRGTKLMCs--LCHCp------------GATIGCdvktCHRTYHYHCALHDKa 113 human
Q9UIL8        88 ------------npdrsfdvesVKKEIQRGRKLKCk--FCHKr------------GATVGCdlknCNKNYHFFCAKKDDa 141 human
XP_006813687 333 glevspysekfvnfgegfdankVRQEMRRGRKLRCrykECGKt------------GATVGCevkhCKATYHYHCAKLDNg 400 Saccoglossus ko...
Q28HQ8        56 -------------nfggfdinsVKKEIKRGEKVKCklkTCRKr------------GATIGCdiedCKKTYHYMCAKNDGa 110 western clawed ...
XP_006009747  46 ------------edfagflvqdVKKEVQRSRRLKCn--YCKKn------------NASIGCdvkqCPRTFHYPCAAKHGl 99  coelacanth
ESO84252      54 --------------fggfkiskVFEELARGRSSKCf--ICKCkrgrtksgsirvtGATCGCavkqCRKTFHYYCAKTSQd 117 owl limpet
ELT92557      55 -------------efggfkvkeVRKEIERGRGLKCn--LCKGqkdk-----amlrGATSGCaikkCSQKFHFYCATQNSk 114 Capitella teleta
XP_697646     57 ------------ddlfgfdledVKKEQRRGQKLRCy--FCNKt------------GATVGCeikrCPRSFHYPCAIKADa 110 zebrafish
Feature 1                               #   #
4NN2_A       108 kyien---------msrgiYKLYC-KNH 125 human
Q8IWS0       114 qirek---------psqgiYMVYC-RKH 131 human
Q9UIL8       142 vpqsd---------gvrgiYKLLC-QQH 159 human
XP_006813687 401 hykfird-----apnlqyrRTLFC-KNH 422 Saccoglossus kowalevskii
Q28HQ8       111 kiinn---------eekekYIILC-KHH 128 western clawed frog
XP_006009747 100 qiv------------eeeeYKIYC-KDH 114 coelacanth
ESO84252     118 citkrlvvsfknknkitvlYRVFCsKEH 145 owl limpet
ELT92557     115 aftkrmeit-dhegdnvvcYRVYCsEKH 141 Capitella teleta
XP_697646    111 raied---------fstgtYRVYC-KSH 128 zebrafish

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