Conserved Protein Domain Family
PHD5_NSD2

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cd15660: PHD5_NSD2 
PHD finger 5 found in nuclear SET domain-containing protein 2 (NSD2)
NSD2, also termed histone-lysine N-methyltransferase NSD2, or multiple myeloma SET domain-containing protein (MMSET), or protein trithorax-5 Wolf-Hirschhorn syndrome candidate 1 protein (WHSC1), is overexpressed frequently in the t(4;14) translocation in 15% to 20% of multiple myeloma. It plays important roles in cancer cell proliferation, survival, and tumor growth, by mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. It also enhances androgen receptor (AR)-mediated transcription. The principal chromatin-regulatory activity of NSD2 is dimethylation of histone H3 at lysine 36 (H3K36me2). NSD2 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-prolin motif (PWWP) domains, a high mobility group (HMG) box, five PHD (plant-homeodomain) zinc fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). The SET domain is responsible for histone methyltransferase activity. The PWWP, HMG, and PHD fingers mediate chromatin interaction and recognition of histone marks. This model corresponds to the fifth PHD finger.
Statistics
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PSSM-Id: 277130
Aligned: 4 rows
Threshold Bit Score: 99.2385
Created: 13-Aug-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteputative
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C HClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structure evidence that human NSD3 (4GND) binds two Zn2+ ions through its PHD finger
  • Comment:The PHD zinc finger is typically characterized as Cys4HisCys3, for this PHD zinc finger the motif is Cys4HisCys2His.
  • Citation:PMID 7583761
  • Citation:PMID 7701562

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #        #    #    #  #            #  #
O96028       1241 ECFRCGDGGQLVLCDRKFCTKAYHLSCLGLGKRPFGKWECPWH 1283 human
AAI71696     1329 ECFRCGDGGQLVLCDKKSCTKAYHLSCLDRTKRPFGRWDCPWH 1371 zebrafish
XP_004911328 1185 YCFRCNDGGELVLCDRKFCTKAYHLSCLSLTKRPFGKWECPWH 1227 western clawed frog
XP_005498528 1245 DCFRCGDGGQLVLCDRKSCTKAYHLSCLGLVKRPFGKWECPWH 1287 rock pigeon

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