Conserved Protein Domain Family
PHD_FXL19

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cd15645: PHD_FXL19 
PHD finger found in F-box and leucine-rich repeat protein 19 (FBXL19)
FBXL19, also termed F-box/LRR-repeat protein 19, is a novel homolog of KDM2A and KDM2B. It belongs to the Skp1-Cullin-F-box (SCF) family of E3 ubiquitin ligases. FBXL19 mediates ubiquitination and interleukin 33 (IL-33)-induced degradation of ST2L receptor in lung epithelia, blocks IL-33-mediated apoptosis, and prevents endotoxin-induced acute lung injury. It also functions as a RhoA antagonist during cell proliferation and cytoskeleton rearrangement, and regulates RhoA ubiquitination and degradation in lung epithelial cells. Moreover, FBXL19 regulates cell migration by targeting Rac1 for its polyubiquitination and proteasomal degradation. It plays an essential role in regulating TGFbeta1-induced E-cadherin down-regulation by mediating Rac3 site-specific ubiquitination and stability. FBXL19 consists of FBXHA and FBXHB domains. A CXXC zinc-finger domain, followed by a plant homeodomain (PHD) finger, is located within the FBXHA domain, and an F-box domain, followed by an antagonist of mitotic exit network protein 1 (AMN1) domain, is located within the FBXHB domain.
Statistics
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PSSM-Id: 277115
Aligned: 4 rows
Threshold Bit Score: 130.437
Created: 20-Mar-2014
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteputative
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structure evidence that human KDM2A (4BBQ) and human KDM2B (4O64) each bind two Zn2+ ions through their PHD finger.
  • Comment:The PHD zinc finger is characterized as Cys4HisCys3.
  • Citation:PMID 7583761
  • Citation:PMID 7701562

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #                      #  #    #  #                   #  #
Q6PCT2        87 VCLLCGEAGKEDTVEgEEEKFGLSLMECTICNEIVHPGCLKMGKaeGVINAEIPNCWECPRC 148 human
NP_001167463  29 VCLLCGDAGKEDTAQeEEQKFNLSLMECTICNEIVHPGCIKMGKseAVINTEIPNCWECPKC 90  African clawed frog
NP_001093617  65 VCFACGEAGKEDTVEsEEEKFSLSLMECTICNEIIHPSCLKMGKseGIINDEIPNCWECPKC 126 zebrafish
XP_006038683  66 VCVACGEAGKEEAAAgEDERFDLSLMECSICNEIIHPACLQMGRaeGVVNAEIPNCWECPKC 127 Chinese alligator

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