3KV5


Conserved Protein Domain Family
PHD_KDM7

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cd15640: PHD_KDM7 
Click on image for an interactive view with Cn3D
PHD finger found in lysine-specific demethylase 7 (KDM7)
KDM7, also termed JmjC domain-containing histone demethylation protein 1D (JHDM1D), or KIAA1718, is a dual histone demethylase that catalyzes demethylation of monomethylated and dimethylated H3K9 (H3K9me2/me1) and H3K27 (H3K27me2/me1), which functions as an eraser of silencing marks on chromatin during brain development. It also plays a tumor-suppressive role by regulating angiogenesis. KDM7 contains a plant homeodomain (PHD) that binds Lys4-trimethylated histone 3 (H3K4me3) and a jumonji domain that demethylates either H3K9me2 or H3K27me2.
Statistics
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PSSM-Id: 277110
Aligned: 3 rows
Threshold Bit Score: 126.255
Created: 17-Aug-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding sitehistone H3
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1      # #            #  #    #  #               #  #   
3KV5_D     39 YCVCRQPYDVnRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88   human
Q08D35      8 YCVCRQPYDVsRFMIECDICKDWFHSSCVKVEEHQAADIDLYHCPNCEVL 57   western clawed frog
Q5RHD1      7 YCVCRQPYDVnRFMIECDICKDWFHGSCVQVVEHHAADIDVYHCPNCEPI 56   zebrafish

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