Conserved Protein Domain Family
PHD_BAZ1A

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cd15627: PHD_BAZ1A 
PHD finger found in bromodomain adjacent to zinc finger domain protein 1A (BAZ1A)
BAZ1A, also termed ATP-dependent chromatin-remodeling protein, or ATP-utilizing chromatin assembly and remodeling factor 1 (ACF1), or CHRAC subunit ACF1, or Williams syndrome transcription factor-related chromatin-remodeling factor 180 (WCRF180), or WALp1, is a subunit of the conserved imitation switch (ISWI)-family ATP-dependent chromatin assembly and remodeling factor (ACF)/chromatin accessibility complex (CHRAC) chromatin remodeling complex, which is required for DNA replication through heterochromatin. It alters the remodeling properties of the ATPase motor protein sucrose nonfermenting-2 homolog (SNF2H). Moreover, BAZ1A and its complexes play important roles in DNA double-strand break (DSB) repair. It is essential for averting improper gene expression during spermatogenesis. It also regulates transcriptional repression of vitamin D3 receptor-regulated genes. BAZ1A contains a WAC motif, a DDT domain, BAZ 1 and BAZ 2 motifs, a WAKZ (WSTF/Acf1/KIAA0314/ZK783.4) motif, a plant homeodomain (PHD) finger, and a bromodomain.
Statistics
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PSSM-Id: 277097
Aligned: 15 rows
Threshold Bit Score: 111.715
Created: 12-Aug-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteputative
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #           #  #    #  #              #  #
Q9NRL2       1150 RCKICRKKGDAENMVLCDGCDRGHHTYCVRPKLKtVPEGDWFCPEC 1195 human
Q8UVR5        224 RCKVCRKKGDGESMVLCDGCDRGHHIYCVRPKLKyVPEGDWFCPEC 269  African clawed frog
XP_693055     390 RCKVCRRKGDAENMLLCDGCGRGYHIFCVRPKLKaVPSEDWFCPEC 435  zebrafish
EOB05009     1126 RCKVCRKKGDAESMVLCDGCDRGYHTYCIRPKLKvIPEGDWFCPEC 1171 mallard
XP_002117215 1140 RCRICRRKGDAELMLLCDECDRGHHTYCLRPPLNsIPAGNWYCPDC 1185 Trichoplax adhaerens
EFX64846     1052 RCRICRRKGDPEKMLLCDGCDKGHHMYCLKPLLTvVPEGDWFCAEC 1097 common water flea
ELT88139     1085 RCRICRRKGDAEKMLLCDGCDRGHHMYCLKPAVKkVPLGDWYCMDC 1130 Capitella sp. I Grassle & Grassle, 1976
EKC25157     1131 RCRICRRKGDAEQMLLCDKCDRGHHMYCLKPRLKhVPKGDWFCPDC 1176 Pacific oyster
ERL92740     1051 RCRICRRKSDSENMLLCDSCNMGHHLYCLKPKLSaVPQGDWFCSQC 1096 mountain pine beetle
XP_006823760  806 RCRICRRKGDAERMLLCDGCDRGHHMYCLKPPVKsIPSGDWYCVDC 851  Saccoglossus kowalevskii

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