2KWJ


Conserved Protein Domain Family
PHD1_d4

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cd15619: PHD1_d4 
Click on image for an interactive view with Cn3D
PHD finger 1 found in d4 gene family proteins
The family includes proteins coded by three members of the d4 gene family, DPF1 (neuro-d4), DPF2 (ubi-d4/Requiem), and DPF3 (cer-d4), which function as transcription factors and are involved in transcriptional regulation of genes by changing the condensed/decondensed state of chromatin in the nucleus. DPF2 is ubiquitously expressed and it acts as a transcription factor that may participate in developmentally programmed cell death. DPF1 and DPF3 are expressed predominantly in neural tissues, and they may be involved in the transcription regulation of neuro-specific gene clusters. The d4 family proteins show distinct domain organization with domain 2/3 in the N-terminal region, a Cys2His2 (C2H2) zinc finger or Kruppel-type zinc finger in the central part and two adjacent plant homeodomain (PHD) fingers (d4-domain) in the C-terminal part of the molecule. This model corresponds to the first PHD finger.
Statistics
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PSSM-Id: 277091
Aligned: 14 rows
Threshold Bit Score: 100.228
Created: 13-Aug-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #                  #  #    #  #                 #  #
2KWJ_A         3 YCDFCLGGsnmnkkSGRPEELVSCADCGRSGHPTCLQFTlNMTEAVKTYKWQCIEC 58  human
Q92782       256 YCDFCLGGsk---kTGCPEDLISCADCGRSGHPSCLQFTvNMTAAVRTYRWQCIEC 308 human
NP_001071860 279 YCDFCLGDadenkkTGESEELVSCSDCGRSGHPTCLQFTdIMTMNVKKYSWQCIEC 334 Ciona intestinalis
NP_001161515 293 YCDFCLGDasenkkTGVSEELISCSDCGRSGHPSCLQFTtKMTSNVKKYRWQCIEC 348 Saccoglossus kowalevskii
NP_001260707 386 YCDFCLGDqrenkkTNMPEELVSCSDCGRSGHPSCLQFTaNMIISVKRYRWQCIEC 441 fruit fly
XP_788653    314 YCDFCLGDatenkkTQTPEDLISCSDCGRSGHPTCLQFTdTMIQKVKGYRWQCIEC 369 purple urchin
Q92785       272 YCDFCLGDskinkkTGQPEELVSCSDCGRSGHPSCLQFTpVMMAAVKTYRWQCIEC 327 human
ELT95039     305 YCDFCLGDdienkkTGMKEELVSCADCGRSGHPSCLQFTaNMIISVKKYPWQCIEC 360 Capitella sp. I Grassle & Grassle, 1976
EKC37461     363 YCDFCLGDseenkkSNQPEELVSCSDCGRSGHPTCLQFTaNMIISVKKYPWQCIEC 418 Pacific oyster
NP_001005717 311 YCDFCLGDelenkkTGSKEEMVSCADCGRSGHPSCLQFSpNMIISVKKYPWQCIEC 366 western clawed frog

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