Conserved Protein Domain Family
PHD_ARID4_like
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cd15615: PHD_ARID4_like 
PHD finger found in Arabidopsis thaliana AT-rich interactive domain-containing protein 4 (ARID4) and similar proteins
This family includes A. thaliana ARID4 (ARID domain-containing protein 4) and similar proteins. Their biological roles remain unclear, but they all contain an AT-rich interactive domain (ARID) and a plant homeodomain (PHD) finger at the C-terminus. ARID is a helix-turn-helix motif-based DNA-binding domain conserved in all eukaryotes. PHD fingers can recognize the unmodified and modified histone H3 tail, and some have been found to interact with non-histone proteins.
Links
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Statistics
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PSSM-Id: 277087
Aligned: 13 rows
Threshold Bit Score: 68.2753
Created: 4-Sep-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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Conserved Features/SitesClick to see Conserved Features Help
 
Zn binding siteputative
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1          #  #                     #    #    #  #                      #  #
Q6NQ79        676 CClICRSst-----------agDWVNCGs--CGEWAHFGCDRrpglgafk-dyaktdglEYVCPNC 727  thale cress
XP_001762197  558 CCiICHSga-----------egDWVNCGs--CSEWAHFGCDQrtglgafk-dyaktdglEYICPRC 609  Physcomitrella patens subsp...
XP_002993250  672 CCiLCHSsa-----------egDWVNCGi--CGEWAHFGCDRrtglatfk-eyaktdglEYICPRC 723  Selaginella moellendorffii
XP_001702690  658 RCvLCNArdre-------ggaaDWLCCDc--CENWVHHSCDKrpglgqyk-dytqgngrVYVCPSC 713  Chlamydomonas reinhardtii
EIE24806      649 TCaICGGsde---------aatDWISCDs--CNNWVHFSCDGrtnlgtfk-dyakgngaTYNCINC 702  Coccomyxa sp. C-169
EFA79870      244 KCpLCGKmynknkdsstecdsdEWIRCDd--CSQWVMTECDGikdislyd--dtqpnplHYSCPKC 305  Polysphondylium pallidum PN500
EET02406       67 LCaLCSNhkcef-----ietegDWIQCDl--CKEWVHQQCDGiynal-------laekiQYTCPRC 118  Giardia intestinalis ATCC 5...
EST48234       45 LCrICGQqtipt-----sefepEWVQCEh--CQQWVHIYCDGihnqq-------llstmQYVCPFC 96   Spironucleus salmonicida
EAR99755      739 HCdYCEQvyenne---scadvkEWVGCEs--CSKWNHVDCEAafrndakikkiykskdfKYYCQKC 799  Tetrahymena thermophila SB210
EAS04779      411 FClYCGQvyydsn----egdgkVWIQCEd--CQYWLHQECEKenglhdid-nlieddsyKFYCMRC 469  Tetrahymena thermophila SB210
EAR85684      259 FCyYCQQvyfddy----niddkEWILCDt--CDRWCHLHCEEekikkafs--ssqsenvQYDCPRC 316  Tetrahymena thermophila SB210
C6KTD2       1763 FCiMCNEkyde-------ddskKWVQCDv--CKFWIHLSCDKnesrnie---tlsnkniDYKCPTC 1816 Plasmodium falciparum 3D7
EDQ81745      108 YCpFCVQiyrekdp--dsfdgkEWVGCDnrtCRRWVHVECEIsggnq-------vdstaFYLCPSC 164  Physcomitrella patens

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