Conserved Protein Domain Family
PHD3_KMT2B

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cd15593: PHD3_KMT2B 
PHD finger 3 found in Histone-lysine N-methyltransferase 2B (KMT2B)
KMT2B, also termed trithorax homolog 2 or WW domain-binding protein 7 (WBP-7), is encoded by the gene that was first named myeloid/lymphoid or mixed-lineage leukemia 2 (MLL2), a second human homolog of Drosophila trithorax, located on chromosome 19. It belongs to the MLL subfamily of H3K4-specific histone lysine methyltransferases (KMT2) and is vital for normal mammalian embryonic development. KMT2B functions as the catalytic subunit in the MLL2 complex, which contains WDR5, RbBP5, ASH2L and DPY30 as integral core subunits required for the efficient methylation activity of the complex. The MLL2 complex is highly active and specific for histone 3 lysine 4 (H3K4) methylation, which stimulates chromatin transcription in a SAM- and H3K4-dependent manner. Moreover, KMT2B plays a critical role in memory formation through mediating hippocampal H3K4 di- and trimethylation. It is also required for RNA polymerase II association and protection from DNA methylation at the MagohB CpG island promoter. KMT2B contains a CxxC (x for any residue) zinc finger domain, three plant homeodomain (PHD) fingers, an extended PHD (ePHD) finger, Cys2HisCys5HisCys2His, two FY (phenylalanine tyrosine)-rich domains, and a SET (Suppressor of variegation, Enhancer of zeste, Trithorax) domain. This model corresponds to the third PHD finger.
Statistics
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PSSM-Id: 277068
Aligned: 5 rows
Threshold Bit Score: 119.953
Created: 13-Aug-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteputative
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #               #  #    #  #                      #  #
Q9UMN6       1337 YCPICTRCYEDNDYESKMMQCAQCDHWVHAKCEGLsDEDYEILSGLPD-SVLYTCGPC 1393 human
AAI59185      170 FCPICIRCYEESEYESKMIQCAKCDKWIHSKCEGLsDEGYELLSNLPD-SVVYTCPPC 226  western clawed frog
XP_002664717 1787 YCTMCFKCYEDNDYDSQMMQCSTCNHWVHAKCEGLtDDLYEILSSLPE-SVVYSCQPC 1843 zebrafish
EMP29869      650 YCPICSHCYEDNDYESKMMQCAKCEHWVHAKCEGLsDEDYEILSSLPE-SVVYNCRPC 706  green sea turtle
XP_005159542 1148 FCTVCLKCYEEHEFDSSMMQCARCAHWVHPKCEGLtDDLHEILCRLRGkSLVFSCAPC 1205 zebrafish

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