Conserved Protein Domain Family
PHD2_PHF1

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cd15582: PHD2_PHF1 
PHD finger 2 found in PHD finger protein1 (PHF1)
PHF1, also termed Polycomb-like protein 1 (PCL1), together with JARID2 and AEBP2, associates with the Polycomb repressive complex 2 (PRC2), which is the major H3K27 methyltransferase that regulates pluripotency, differentiation, and tumorigenesis through catalysis of histone H3 lysine 27 trimethylation (H3K27me3) on chromatin. PHF1 is essential in epigenetic regulation and genome maintenance. It acts as a dual reader of Lysine trimethylation at Lysine 36 of Histone H3 and Lysine 27 of Histone variant H3t. PHF1 consists of an N-terminal Tudor domain followed by two plant homeodomain (PHD) fingers, and a C-terminal MTF2 domain. Its Tudor domain selectively binds to histone H3K36me3. Moreover, PHF1 is required for efficient H3K27me3 and Hox gene silencing. It can mediate deposition of the repressive H3K27me3 mark and acts as a cofactor in early DNA-damage response. This model corresponds to the second PHD finger.
Statistics
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PSSM-Id: 277057
Aligned: 4 rows
Threshold Bit Score: 113.124
Created: 10-Sep-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteputative
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C [CH] H [CH] C [CH]Click to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         # #            #  #    #  #                  #  #  
O43189       188 YCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRG 239 human
NP_001081958 193 YCYCGGPGEWNMKMLQCCRCLQWFHEACTQCLSKPLLYGDRFYVFECSVCTR 244 African clawed frog
EMP26576     201 YCYCGGPGEWNLKMLQCCSCAQWFHEACTQCLSKPLLYGDRFYVFECCVCTG 252 green seaturtle
XP_002665057 156 YCYCAGPGEWNLKMLQCGSCGQWFHEACTQCLSKPLLYGDRFYQFQCSVCSN 207 zebrafish

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