Conserved Protein Domain Family
PHD1_PHF19

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cd15579: PHD1_PHF19 
PHD finger 1 found in PHD finger protein 19 (PHF19)
PHF19, also termed Polycomb-like protein 3 (PCL3), is a component of the polycomb repressive complex 2 (PRC2), which is the major H3K27 methyltransferase that regulates pluripotency, differentiation, and tumorigenesis through catalysis of histone H3 lysine 27 trimethylation (H3K27me3) on chromatin. PHF19 consists of an N-terminal Tudor domain followed by two PHD fingers, and a C-terminal MTF2 domain. It binds trimethylated histone H3 Lys36 (H3K36me3) through its Tudor domain and recruits the PRC2 complex and the H3K36me3 demethylase NO66 to embryonic stem cell genes during differentiation. Moreover, PHF19 and its upstream regulator, Akt, play roles in the phenotype switch of melanoma cells from proliferative to invasive states. This model corresponds to the first PHD finger.
Statistics
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PSSM-Id: 277054
Aligned: 4 rows
Threshold Bit Score: 104.962
Created: 13-Aug-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteputative
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structure evidence that mouse MTF2 (2YT5) binds two Zn2+ ions through its PHD finger
  • Comment:ThePHD zinc finger is characterized as Cys4HisCys3.
  • Citation:PMID 7583761
  • Citation:PMID 7701562

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #             #  #    #  #                 #  #  
Q5T6S3        98 KCNICLGKTSgPLNEILICGKCGLGYHQQCHIPIAGSadqplltPWFCRRCIF 150 human
EMP34609      99 KCNICLGKTSgPLNEILICGKCGLGYHQQCHIPVVDSsdgpvltPWFCRRCIF 151 green seaturtle
NP_001072446  97 KCNVCTGKSSlPLNEILICGKCGLGYHQKCHIPVVDSgengplePWFCRRCIF 149 western clawed frog
NP_001121998  96 KCSVCSDMSLdPGNEILICGKCGVGFHQLCHLPTVESsad--psPWFCRRCIF 146 zebrafish

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