Conserved Protein Domain Family
PHD_JADE

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cd15573: PHD_JADE 
PHD finger found in proteins Jade-1, Jade-2, Jade-3, and similar proteins
This family includes proteins Jade-1 (PHF17), Jade-2 (PHF15), and Jade-3 (PHF16), each of which is required for ING4 and ING5 to associate with histone acetyltransferase (HAT) HBO1 and EAF6 to form a HBO1 complex that has a histone H4-specific acetyltransferase activity, a reduced activity toward histone H3, and is responsible for the bulk of histone H4 acetylation in vivo. This family also contains Drosophila melanogaster PHD finger protein rhinoceros (RNO). It is a novel plant homeodomain (PHD)-containing nuclear protein that may function as a transcription factor that antagonizes Ras signaling by regulating transcription of key EGFR/Ras pathway regulators in the Drosophila eye. All Jade proteins contain a canonical Cys4HisCys3 PHD finger followed by a non-canonical extended PHD (ePHD) finger, Cys2HisCys5HisCys2His, both of which are zinc-binding motifs. This model corresponds to the canonical Cys4HisCys3 PHD finger.
Statistics
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PSSM-Id: 277048
Aligned: 15 rows
Threshold Bit Score: 89.3902
Created: 7-Aug-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteputative
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on structure evidence that human BRD1 (2KU3) binds two Zn2+ ions through its PHD finger.
  • Comment:The PHD zinc finger is characterized as Cys4HisCys3.
  • Citation:PMID 7583761
  • Citation:PMID 7701562

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #             #  #    #  #            #  #
Q6IE81        205 VCDVCQSPdgEDGNEMVFCDkCNICVHQACYGILkVPEGSWLCRTC 250  human
Q92613        202 ICDVCRSPdsEEGNDMVFCDkCNVCVHQACYGILkVPEGSWLCRSC 247  human
Q9NQC1        201 VCDVCRSPegEDGNEMVFCDkCNVCVHQACYGILkVPTGSWLCRTC 246  human
Q7YZH1        314 ICDVCRSPdsEEANEMVFCDnCNICVHQACYGITaIPSGQWLCRTC 359  fruit fly
XP_004990276  336 VCDVCQLPdsEEGNEMVFCDgCNLCVHQVCYGIKvIPEGNWYCCAC 381  Salpingoeca sp. ATCC50818
ELU08893      259 VCDVCKSPesEDGNEMVFCDaCDICVHQACYGIQkVPEGSWLCRIC 304  Capitella sp. I Grassle & Grassle, 1976
EFX70030      162 ICDVCRGPdsEEGNEMVFCDrCNICVHQACYGILsIPPGPWLCKPC 207  common water flea
XP_001641778  138 CCDVCQSPesEEGNEMVFCDsCDICVHQACYGIQsIPSGSWLCQPC 183  starlet sea anemone
XP_003389407  188 VCDVCKDPerEEANEMIFCDsCNVCVHQACYGVQlIPKGSWLCRPC 233  Amphimedon queenslandica
XP_002116074  131 PCDVCQSPfsEEGNEMVFCDrCNVCVHQACYGITvIPDGNWYCEPC 176  Trichoplax adhaerens

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