4GND


Conserved Protein Domain Family
PHD5_NSD

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cd15568: PHD5_NSD 
Click on image for an interactive view with Cn3D
PHD finger 5 found in nuclear receptor-binding SET domain-containing (NSD) proteins
The nuclear receptor binding SET domain (NSD) protein is a family of three HMTases, NSD1, NSD2/MMSET/WHSC1, and NSD3/WHSC1L1, that are critical in maintaining chromatin integrity. Reducing NSD activity through specific lysine-HMTase inhibitors appears promising to help suppress cancer growth. NSD proteins have specific mono- and dimethylase activities for H3K36, and they play non-redundant roles during development. NSD1 plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. NSD2 is involved in cancer cell proliferation, survival, and tumor growth, by mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. NSD3 is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD proteins contain a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). This model corresponds to the fifth PHD finger.
Statistics
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PSSM-Id: 277043
Aligned: 31 rows
Threshold Bit Score: 60.4208
Created: 13-Aug-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteputative
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C HClick to see conserved feature residue pattern help
Evidence:
  • Structure:4GND; Human NSD3 binds two Zn2+ ions through its PHD finger.
  • Comment:The PHD zinc finger is typically characterized as Cys4HisCys3, for this PHD zinc finger the motif is Cys4HisCys2His.
  • Citation:PMID 7583761
  • Citation:PMID 7701562

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #                           #           #    #  #                       #  #
4GND_A         17 YCFqCGDG-------------------GELVMCDkk-------dCPKAYHLLCLNLTqp-----------pyGKWECPWH 59   human
ETV79128      198 RCFlCGLG-------------------GELVVCEfp-------rCTKVYHQLCLGAFpfpt--------dedTEWVCPRH 243  Aphanomyces a...
EEY54092      341 VCFcCKDG-------------------GNVIECDwkglngafarCPKVYHEDCLGYEvp-----------egKTWVCPRH 390  Phytophthora ...
BAM81331      380 ICFrCGRPgg---------------sgELLHRCDip-------gCGKVYHASCVSCLsrapyftngsdlterRHWYCPWH 437  Cyanidioschyz...
XP_004989619 1227 ICHkCRKP-------------------GTLLLCDfe-------gCPRVYHPECAGVNmddee------ddddEPWFCPAH 1274 Salpingoeca s...
ETW19579      792 RCFiCNNTknhkaivkdrngndieidyGDMINCFr---------CPKTYHKLCEGIKden----------vkKTWTCSWH 852  Plasmodium fa...
EFA10454     1531 PCFiCGKQ-------------------GDVAACNnk-------iCTKYYHLACVGLEawp----------egNKWVCQWH 1574 red flour beetle
EPR60254     1604 KCFlCGNGkdfehtsveadgnttkvslGDLVYCSg---------CPRSYHRVCEGLPrd-----------vkKSWRCRWH 1663 Toxoplasma go...
CBH09871      796 ECFvCGEGmr---------------plQPLFHCSw---------CMKAYHAECANERvlpeg------vsapRNWTCPRH 845  Trypanosoma b...
EME28807      274 LCFwCKEP-------------------EATITCSfp-------rCSKTFHRGCIMSEiv-----------egSDWICPWH 316  Galdieria sul...

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