Conserved Protein Domain Family
PHD1_NSD

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cd15564: PHD1_NSD 
PHD finger 1 found in nuclear receptor-binding SET domain-containing (NSD) proteins
The nuclear receptor binding SET domain (NSD) protein is a family of three HMTases, NSD1, NSD2/MMSET/WHSC1, and NSD3/WHSC1L1, that are critical in maintaining chromatin integrity. Reducing NSD activity through specific lysine-HMTase inhibitors appears promising to help suppress cancer growth. NSD proteins have specific mono- and dimethylase activities for H3K36, and they non-redundant roles during development. NSD1 plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. NSD2 is involved in cancer cell proliferation, survival, and tumor growth, by mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. NSD3 is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD proteins contain a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (Cys5HisCysHis). This model corresponds to the first PHD finger.
Statistics
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PSSM-Id: 277039
Aligned: 12 rows
Threshold Bit Score: 56.1894
Created: 12-Aug-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteputative
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C [CH] H [CH] C [CH]Click to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #            #   #    #  #                                                  
O96028        669 VCQlCEKp----GSLLLCEGpCCGAFHLACLGls--------------------------------------rrPEGRFT 706  human
EFN85544      234 VCQiCEKt----GKLTRCKGpCYSYFHLPCVKpgesspehsvddntsedkiiddvnvikrsindrddnvkneeqEDEMFK 309  Harpegnathos ...
Q96L73       1545 VCQnCEKl----GELLLCEAqCCGAFHLECLGlt--------------------------------------emPRGKFI 1582 human
Q9BZ95        703 VCQiCESs---gDSLIPCEGeCCKHFHLECLGla--------------------------------------slPDSKFI 741  human
XP_003384664  378 ICSiCDNpsnptQCIITCKGhCLNSFHVDCLGli--------------------------------------spPSFPFV 419  Amphimedon qu...
XP_002116791   40 VCMlCEGi---gEKLVTCQGgCFSKFHLECLGit--------------------------------------ewPVKGFK 78   Trichoplax ad...
XP_005102412  731 ICAvCEKn----ENVVECSGsCCQHFHLACVGmd--------------------------------------lqSDASFK 768  California se...
ESO90320      408 ICViCEQp----GQLLECQGaCQGHFHASCLKvs--------------------------------------dyQEAEFK 445  owl limpet
ELU04158      492 LCGvCEKp----NELLHCVGpCLGHFHAACLGls--------------------------------------vvPTSTFK 529  Capitella teleta
XP_002164851  452 YCCiCEGs---eGQLITCQGsCFNSFHFDCLGvs---------------------------------------cIKTSFT 489  Hydra magnipa...
XP_002433644  197 VCTvCEKm----GATLFCTGpCKLAFHADCLGvs---------------------------------------hVPRAFV 233  black-legged ...
EKC31425      314 LCQvCEDn----GDLMECEGeCHNYFHKSCVSe----------------------------------------nVEEPFK 349  Pacific oyster
Feature 1         #  # 
O96028        707 CSECA 711  human
EFN85544      310 CIDCL 314  Harpegnathos saltator
Q96L73       1583 CNECR 1587 human
Q9BZ95        742 CMECK 746  human
XP_003384664  420 CDECT 424  Amphimedon queenslandica
XP_002116791   79 CQECT 83   Trichoplax adhaerens
XP_005102412  769 CPECT 773  California sea hare
ESO90320      446 CNECE 450  owl limpet
ELU04158      530 CDECS 534  Capitella teleta
XP_002164851  490 CDECL 494  Hydra magnipapillata
XP_002433644  234 CDECT 238  black-legged tick
EKC31425      350 CEECK 354  Pacific oyster

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