2RI7,2F6J,2F6N,2FUI,3QZV


Conserved Protein Domain Family
PHD2_3_BPTF

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cd15560: PHD2_3_BPTF 
Click on image for an interactive view with Cn3D
PHD finger 2 and 3 found in bromodomain and PHD finger-containing transcription factor (BPTF)
BPTF, also termed nucleosome-remodeling factor subunit BPTF, or fetal Alz-50 clone 1 protein (FAC1), or fetal Alzheimer antigen, functions as a transcriptional regulator that exhibits altered expression and subcellular localization during neuronal development and neurodegenerative diseases such as Alzheimer's disease. It interacts with the human orthologue of the Kelch-like Ech-associated protein (Keap1). Its function and subcellular localization can be regulated by Keap1. Moreover, BPTF is a novel DNA-binding protein that recognizes the DNA sequence CACAACAC and represses transcription through this site in a phosphorylation-dependent manner. Furthermore, BPTF interacts with the Myc-associated zinc finger protein (ZF87/MAZ) and alters its transcriptional activity, which has been implicated in gene regulation in neurodegeneration. Some family members contain two or three plant homeodomain (PHD) fingers, which may be involved in complex formation with histone H3 trimethylated at K4 (H3K4me3). This family corresponds to the second and third PHD fingers.
Statistics
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PSSM-Id: 277035
Aligned: 24 rows
Threshold Bit Score: 88.9425
Created: 12-Aug-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding sitehistone H3
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          # #            #  #    #  #                #  #
2RI7_A         10 YCICKTPEDEskFYIGCDrCQNWYHGRCVGILQSEAEl-IDEYVCPQC 56   human
EED95135       87 YCICRLPYEG--FMIGCDgCEEWYHGPCVGMTEEQAAk-FDKYVCVRC 131  Thalassiosira pseudonana CCMP1335
EEY64256      315 YCICRQPFDG--LMIGCDhCDDWFHDCCIGMSKEKAEk-VERYTCPSC 359  Phytophthora infestans T30-4
CCD59366      788 YCVCRTPYEPtrVYIACDgCDEWYHPECVGLTPEQAVnhTDTYLCPTC 835  Schistosoma mansoni
XP_780572    3347 YCLCKRPYDEaqFYIGCDrCNDWFHGHCVGISQDEAEs-IENYICPGC 3393 purple urchin
Q6BER5       1961 YCVCQKPYDDtkFYVGCDsCQGWFHPECVGTTRAEAEq-AADYNCPAC 2007 nematode
ELT92004     1637 YCICRTPYDEsqFYIGCDtCQDWFHGTCVNVTKAQADr-MDTYICPRC 1683 Capitella sp. I Grassle & Grassle, 1976
XP_002160432  358 YCICRQPYDEskFYIGCDfCQDWFHGTCVGMTQAEASl-VEEYKCPNC 404  green hydra
XP_006821802   31 YCICRQPYDEsqFYIGCDrCQDWFHGRCVGISQTEADn-IEKYLCPNC 77   Saccoglossus kowalevskii
CCD59366      729 YCVCKTPYNPlrEYIGCDlCRDWFHFECVGLDPKDSDklGDSWHCPDC 776  Schistosoma mansoni

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