4Q6F,4QF3


Conserved Protein Domain Family
PHD_BAZ2A_like

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cd15545: PHD_BAZ2A_like 
Click on image for an interactive view with Cn3D
PHD finger found in bromodomain adjacent to zinc finger domain protein 2A (BAZ2A) and 2B (BAZ2B)
BAZ2A, also termed transcription termination factor I-interacting protein 5 (TTF-I-interacting protein 5, or Tip5), or WALp3, is an epigenetic regulator. It has been implicated in epigenetic rRNA gene silencing, as the large subunit of the SNF2h-containing chromatin-remodeling complex NoRC that induces nucleosome sliding in an ATP- and histone H4 tail-dependent fashion. BAZ2A has also been shown to be broadly overexpressed in prostate cancer, to regulate numerous protein-coding genes and to cooperate with EZH2 (enhancer of zeste homolog 2) to maintain epigenetic silencing at genes repressed in prostate cancer metastasis. Its overexpression is tightly associated with a prostate cancer subtype displaying CpG island methylator phenotype (CIMP) in tumors and with prostate cancer recurrence in patients. BAZ2B, also termed WALp4, is a bromodomain-containing protein whose biological role is still elusive. It shows high sequence similarly with BAZ2A. Both BAZ2A and BAZ2B contain a TAM (TIP5/ARBP/MBD) domain, a DDT domain, four AT-hooks, BAZ 1 and BAZ 2 motifs, a WAKZ (WSTF/Acf1/KIAA0314/ZK783.4) motif, a plant homeodomain (PHD) finger, and a bromodomain. BAZ2B also harbors an extra Apolipophorin-III like domain in its N-terminal region.
Statistics
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PSSM-Id: 277020
Aligned: 17 rows
Threshold Bit Score: 73.1139
Created: 12-Aug-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteH3 histone
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #           #  #    #  #              #  #
4Q6F_A          8 TCLVCRKGdndeFLLLCDGCDRGCHIYCHRPKMeaVPEGDWFCTVC 53   human
XP_002109599 1630 FCQICRKGdnesLLLLCDKCDCGTHTYCCTPKLtsVPEGDWFCPKC 1675 Trichoplax adhaerens
XP_003385631 2287 FCVVCQTGdnesLLLLCDRCDRGTHTYCCRPKLdaIPDGDWFCHNC 2332 Amphimedon queenslandica
XP_002165676   51 YCYGCHDIenekQILFCDRCDRGYHMYCIKPKMkkKPKGDWFCPVC 96   Hydra vulgaris
XP_003723850 2069 SCKVCRRScdeaKLLLCDWCDRGYHMYCLKPKIteVPEGDWYCDNC 2114 purple sea urchin
CCD75440     2198 LCQICRRDnnedCLLLCDGCDRGYHTYCFRPQLsnIPSGDWFCYDC 2243 Schistosoma mansoni
ELT91863     1628 TCVICIKDddeaQLLLCDSCDKGYHTYCFKPKIedIPDGNWYCFEC 1673 Capitella sp. I Grassle & Grassle, 1976
Q23590       1088 LCQICKSMdg-dEMLVCDGCESGCHMECFRPRMtkVPEGDWFCQRC 1132 Caenorhabditis elegans
XP_002170910  348 FCILCRKSdnedRLLLCDACDRGCHMYCCKPKLevIPEGDWFCPEC 393  Hydra vulgaris
4QF3_A          8 YCQICRKGdneeLLLLCDGCDKGCHTYCHRPKIttIPDGDWFCPAC 53   human

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