Conserved Protein Domain Family
PHD1_KMT2A_like

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cd15506: PHD1_KMT2A_like 
PHD finger 1 found in histone-lysine N-methyltransferase 2A (KMT2A) and 2B (KMT2B)
This family includes histone-lysine N-methyltransferase trithorax (Trx) like proteins, KMT2A (MLL1) and KMT2B (MLL2), which comprise the mammalian Trx branch of the COMPASS family, and are both essential for mammalian embryonic development. KMT2A regulates chromatin-mediated transcription through the catalysis of methylation of histone 3 lysine 4 (H3K4), and is frequently rearranged in acute leukemia. KMT2A functions as the catalytic subunit in the MLL1 complex. KMT2B is a second human homolog of Drosophila trithorax, located on chromosome 19 and functions as the catalytic subunit in the MLL2 complex. It plays a critical role in memory formation through mediating hippocampal H3K4 di- and trimethylation. It is also required for RNA polymerase II association and protection from DNA methylation at the MagohB CpG island promoter. Both KMT2A and KMT2B contain a CxxC (x for any residue) zinc finger domain, three plant homeodomain (PHD) fingers, an extended PHD (ePHD) finger, Cys2HisCys5HisCys2His, two FY (phenylalanine tyrosine)-rich domains, and a SET (Suppressor of variegation, Enhancer of zeste, Trithorax) domain. This model corresponds to the first PHD finger.
Statistics
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PSSM-Id: 276981
Aligned: 15 rows
Threshold Bit Score: 52.3617
Created: 12-Aug-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteputative
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C [CH] H [CH] C [CH]Click to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #           #  #    #  #                 #  #
Q9UMN6       1203 VCLLCASKGl-hELVFCQVCCDPFHPFCLEEaerpl-pqhhDTWCCRRC 1249 human
CDS26386     1102 ICYLCGSAGv--DLQYCRACAEPYHAFCDRFqsit--kgdkENFICSNC 1146 Hymenolepis microstoma
ELU11679       15 VCYLCGSGGh-nQLIYCSVCCEPFHSFCLDKgerpl-adnlENWCCRKC 61   Capitella sp. I Grassle & Grassle, 1976
XP_002401627  806 VCFLCASAGe-eELLFCTVCCEPYHWFCLDPeeapq-gldkESWCCPRC 852  black-legged tick
ENN74118      535 MCFVCGSAGl-dNMLVCCICCEPYHIFCMEEirap--iiskKDWVCIQC 580  mountain pine beetle
XP_003740087  869 LCFVCASSVkhnPAVYCAMCCEPYHTFCVQIrdve--nintMNWLCPKC 915  western predatory mite
EHJ64265      859 LCFLCGSAGr-eKMLVCSSCCEWYHVWCAEEag------ggGSWTCARC 900  monarch butterfly
EFX77647        5 LCYLCGSAGr-nELVCCSSCCESFHPFCGEAaisvitnaagTPWICLNC 52   common water flea
ESO93734        3 VCYLCGSLGq-eELLYCCICCEAYHTFCIDEedrps-ndnkDNWCCDNC 49   owl limpet
GAA50314      487 ICYACGSGGg--QLLFCVSCAEPFHFYCVERqfrp---rrkDHFICRNC 530  Clonorchis sinensis

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