1WEQ


Conserved Protein Domain Family
PHD_PHF7_G2E3_like

?
cd15496: PHD_PHF7_G2E3_like 
Click on image for an interactive view with Cn3D
PHD finger found in PHD finger protein 7 (PHF7) and G2/M phase-specific E3 ubiquitin-protein ligase (G2E3)
PHF7, also termed testis development protein NYD-SP6, is a testis-specific plant homeodomain (PHD) finger-containing protein that associates with chromatin and binds histone H3 N-terminal tails with a preference for dimethyl lysine 4 (H3K4me2). It may play an important role in stimulating transcription involved in testicular development and/or spermatogenesis. PHF7 contains a canonical Cys4HisCys3 PHD finger and a non-canonical extended PHD (ePHD) finger, Cys2HisCys5HisCys2His, both of which may be involved in activating transcriptional regulation. G2E3 is a dual function ubiquitin ligase (E3) that may play a possible role in cell cycle regulation and the cellular response to DNA damage. It is essential for prevention of apoptosis in early embryogenesis. It is also a nucleo-cytoplasmic shuttling protein with DNA damage responsive localization. G2E3 contains two distinct RING-like ubiquitin ligase domains that catalyze lysine 48-linked polyubiquitination, and a C-terminal catalytic HECT domain that plays an important role in ubiquitin ligase activity and in the dynamic subcellular localization of the protein. The RING-like ubiquitin ligase domains consist of a PHD finger and an ePHD finger. This model corresponds to the Cys4HisCys3 canonical PHD finger.
Statistics
?
PSSM-Id: 276971
Aligned: 9 rows
Threshold Bit Score: 82.8505
Created: 26-Mar-2014
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Zn binding siteputative
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:1WEQ; Mouse PHD finger protein 7 binds two Zn2+ through its PHD finger.
  • Comment:The PHD zinc finger is characterized as Cys4HisCys3.
  • Citation:PMID 7583761
  • Citation:PMID 7701562

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1          #    #                   #  #     #  #           #  #
1WEQ_A         23 HCDApiCLYEQGRDsfedegrWRLILCATCGSHGTHRDCSSLRpnskKWECNEC 76   house mouse
EMC88344      214 RCDAreCLCPQGREhreergpWQLLLCRSCAAEGTHRGCCGLRtsgaLWECDSC 267  rock pigeon
XP_005502161  228 SCDAsqCLCPAGREqvekkgpWRLLLCSSCGSRGTHQRCSAMGedddSWECIDC 281  rock pigeon
Q9BWX1        247 HCDApiCLYEQGRDsfedegrWCLILCATCGSHGTHRDCSSLRsnskKWECEEC 300  human
NP_001003822  237 RCDAvkCLCHKGREhssqsgyFEIVLCKLCGSRGTHRKCSNIRvyeaDWMCADC 290  zebrafish
Q7L622        232 RCDVrrCRCKEGRDynapdskWEIKRCQCCGSSGTHLACSSLRsweqNWECLEC 285  human
EZA51961      247 QCDAvlCLCPKGRKytssnakWELVLCRTCGSQGIHMSCGQLKwanpVWDCVEC 300  Cerapachys biroi
Q5F4A1        231 HCDIrrCLCKNGRDynkpdskWEIKRCQSCGSRGTHLACSSIKsweqNWECVEC 284  chicken
XP_002932878  232 RCDAkkCVCRGGREynepenkWEIVRCQCCGSSGTHRACSSIGeldqSWECPDC 285  western clawed frog

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap