1Q7F


Conserved Protein Domain Family
NHL_brat_like

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cd14959: NHL_brat_like 
Click on image for an interactive view with Cn3D
NHL repeat domain of the Drosophila brain-tumor protein (brat) and similar proteins
Drosophila brain-tumor (brat) has been identified as a tumor suppressor that negatively regulates cell proliferation during development of the Drosophila larval brain. It appears to be recruited to the 3'-untranslated region of hunchback RNA and regulates its translation by forming a complex with Pumilio (Pum) and Nanos (Nos). The NHL domain of brat appears to be involved by interacting with the RNA-binding Puf repeats of Pumilio, a sequence-specific RNA binding protein. This family also contains the Caenorhabditis elegans homolog NCL-1. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.
Statistics
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PSSM-Id: 271329
Aligned: 19 rows
Threshold Bit Score: 381.233
Created: 21-Mar-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:putative Pumilio binding site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       #######                     #                                     
1Q7F_A          9 KRQRMIYHCKFGEfGVMEGQFTEPSGVAVNaQNDIIVADTNNHRIQIFDKEGRf---------------------kFQFG 67   fruit fly
ELU16635      519 KRQKMIYHCKFGEfGVMEGQFTEPSGVAVNaQNDIIVADTNNHRIQIFDKEGRf---------------------kFQFG 577  Capitella teleta
ESP00015      473 RRQKMIYHCRFGEfGVLEGQFTEPSGVAVNaQNDIIVADTNNHRIQIFDKEGRf---------------------kFQFG 531  owl limpet
ESO04923      496 KTNSMEIRTKFGQlGPGKGQFNAPHGFCLGmDEDIVVADTNNHRIQVFDKSGEf---------------------kYQFG 554  Helobdella ro...
ESP03686      631 GLVIVAFRCKFGQlGPGKGQFNSPHGFCLGfDQDIIVADTNNHRIQVFDKTGDf---------------------kYQFG 689  owl limpet
XP_005112881  632 KTNAMQIRCKFGQlGPGKGQFNSPHGFCLGiDEDIVVADTNNHRVQVFQKGGEf---------------------kYQFG 690  California se...
ESO00823      190 RRIKMEYHCKFGEyGNEAGLFTEPSGVAVGrDNEILVADANNHRIQVFDSTGAfrriigq----------dstrgvSSGD 259  Helobdella ro...
XP_005105088  829 CRTRTSFVHVFGDyGRGEYAFTEPSGQAYFeDGSYVICDTNNHRIVYYNKDHEyvrsigqppnlpalsedhemgkgGQRG 908  California se...
P34611        566 KRQKMIYHCKFGEfGVMEGQFTEPSGVAVNgQGDIVVADTNNHRIQVFDKEGRf---------------------kFQFG 624  Caenorhabditi...
Q9W378        913 KATPMQIRCKFGSlGTAKGQFNSPHGFCLGvDEEIIVADTNNHRIEVFDKMGAl---------------------kFQFG 971  fruit fly
Feature 1           ####     #                 #                                                  
1Q7F_A         68 ECGKRDs-QLLYPNRVAVVrNSGDIIVTERS-PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECkVMRVI 145  fruit fly
ELU16635      578 ECGKRDg-QLLYPNRVAVVrTSGDIVVTERS-PTHQVQIYNQYGQFVRKFGASILQHPRGVTVDDKGRIIIVECkVMRVI 655  Capitella teleta
ESP00015      532 ECGKRDg-QLLYPNRVSVVkASGDIIVTERS-PTHQIQIYNQYGQFVRKFGANVLQHPRGVTVDNKGRIIIVECkVMRVI 609  owl limpet
ESO04923      555 IPGLEEg-QLWYPRKVAVIrTSGRYVVCDRGsERSRMQLFTRTGQFIKKIAIRYIDIVAGLAITSQGHIVAVDSvSPTVF 633  Helobdella ro...
ESP03686      690 IPGREEg-QLWYPRKVAVMrASARYVVCDRGnERSRMQIFTKNGHFVKKIAIRYIDIVAGLAITAAGNIAAVDSvSPTVF 768  owl limpet
XP_005112881  691 IPGREEg-QLWYPRKVAVIlKTGKFVVCDRGnERSRMQIFNRNGNFLRKIAIRYIDIVAGLAITPEGYIVAVDSvSPTVF 769  California se...
ESO00823      260 VRGSQNegDLVYPNRLAVNkVTGCIYVTERS-PTHQVRVYDETGRFVRRFGAHVLQHPRGITVDRLGRIIVIECkVMRVV 338  Helobdella ro...
XP_005105088  909 KGFTRQdgYLYFPNRVAICpVTKHIVATERP-PSHDVQIFTIEGDFVRCFGGSVLQHPRGVTVDENGVIIVVECkVMKLT 987  California se...
P34611        625 ECGKRDg-QLLYPNRVAVNrTTGDFVVTERS-PTHQIQVYNQYGQFLRKFGANILQHPRGVCVDSKGRIIVVECkVMRVI 702  Caenorhabditi...
Q9W378        972 VAGKEEg-QLWYPRKVAVMhNNGKFVVCDRGnERSRMQIFSKCGHFMRKIAIRYIDIVAGLAVTAKGHIVAVDSvSPTVF 1050 fruit fly
Feature 1                                                                                         
1Q7F_A        146 IFDQNGNVLHKFGCSKhLEFPNGVVVNDkQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADN 225  fruit fly
ELU16635      656 IFDQMGNVLQKFGCSKhLEFPNGVVVNDkEEIFISDNRAHCVKVFSYQGAFLRQIGGEGITNYPIGVGINAAGEILIADN 735  Capitella teleta
ESP00015      610 IFDQYGNVLNKFGCSKhLQFPNSVVVNDkEEIFISDNRAHCVKVFNYQGLYLRQIGGEGVTNYPIGVGINSAGEVLVADN 689  owl limpet
ESO04923      634 CISESGELIKWFDCSDyMREPSDIAVSG-KDYYVCDFKGHCVVVFNEDGQFLHRIGCETITNYPNGIDISDAGDVLIGDS 712  Helobdella ro...
ESP03686      769 CIAESGDLLKWFDCSDyMREPSDIAVSG-SEYFVCDFKGHCVVVFNEEGQFMRRIGCENITNYPNGIDISDDGDVLIGDS 847  owl limpet
XP_005112881  770 WISETGDLLKWFDCSDfMREPSDIAINN-YEYFVCDFKGHCVVVFSKDGQFLRRIGCENITNYPNGIDISGHGDVLIGDS 848  California se...
ESO00823      339 IFNSSGSVLNRFIVEKkVNFPNGVAVNDkEEIFISDNRRHGVVVFDYQGAFLRTIGGIGITNYPIGVGINSAGEVVVADN 418  Helobdella ro...
XP_005105088  988 MFDHDGNQLASHSLAKdLEFPNDVAAKD-GKIYISDNRGHCVQVFDYDAKFLQKIGNDNLTYFPIGVSINYLNQIVVTDN 1066 California se...
P34611        703 IFDMFGNILQKFSCSRyLEFPNGVCTNDkNEILISDNRAHCIKVFSYEGQYLRQIGGEGVTNYPIGVGINSLGEVVVADN 782  Caenorhabditi...
Q9W378       1051 VISEEGELVRWFDCSDyMREPSDIAIRD-NDFYVCDFKGHCVAVFQDDGTFLYRIGNEKVTCFPNGIDISNAGDVLIGDS 1129 fruit fly
Feature 1                                                                   
1Q7F_A        226 HNN-FNLTIFTQDGQLI-SALEsKVKHAQCFDVALM-DDGSVVLASK-DYRLYIYRYV 279  fruit fly
ELU16635      736 HNN-FNLTTFTQDGQLVsALES-KVKHAQCFDVALM-DEGSIVLASK-DYRLYIYRYA 789  Capitella teleta
ESP00015      690 HNN-FNLTNFTQDGQLInALES-KVKHAQCFDVALM-DDGSVVLASK-DYKLYIYKYM 743  owl limpet
ESO04923      713 HGNrFHVAVFQRDGSLIgEFECpYVKVSRCCGLKIT-SEGYIVTLAKnNQHVLVLNTL 769  Helobdella robusta
ESP03686      848 HGNrFHVGVFQRDGSLIgEFQCpYVKVSRCCGLKIT-SEGYVVTLAKnNHHVLVLNTL 904  owl limpet
XP_005112881  849 HGNrFHVGVFQRDGSLIsEFQCpYVKVSRCCGLKIT-SEGYIVTLAKnNHHVLVLNTL 905  California sea hare
ESO00823      419 HNN-FNVTLFTQDGQLIrALES-RVKHAQCFDTALM-GDGSIVLSSK-DYRIYIYHYG 472  Helobdella robusta
XP_005105088 1067 HNT-FNITVFDLEGRASyIFES-ITKHAQCHNVAVHpTKLELMLTTK-DCNVYFFNYD 1121 California sea hare
P34611        783 HNN-FNLTVFSQDGTMIgALES-RVKHAQCFDVALV-DDGSVVLASK-DYRLYLYRFL 836  Caenorhabditis elegans
Q9W378       1130 HGNrFHVACYSREGALQsEFECpHVKVSRCCGLKIT-SEGYVVTLAKnNHHVLVLNTL 1186 fruit fly

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